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Systematic histone H4 replacement in Arabidopsis thaliana reveals a role for H4R17 in regulating flowering time

Emma Tung Corcoran, Chantal LeBlanc, Mia Arias Tsang, Anthony Sarkiss, Yuzhao Hu, Ullas V. Pedmale, Yannick Jacob
doi: https://doi.org/10.1101/2022.01.17.476649
Emma Tung Corcoran
1Yale University, Department of Molecular, Cellular and Developmental Biology, Faculty of Arts and Sciences; 260 Whitney Avenue, New Haven, Connecticut 06511, United States.
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Chantal LeBlanc
1Yale University, Department of Molecular, Cellular and Developmental Biology, Faculty of Arts and Sciences; 260 Whitney Avenue, New Haven, Connecticut 06511, United States.
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Mia Arias Tsang
1Yale University, Department of Molecular, Cellular and Developmental Biology, Faculty of Arts and Sciences; 260 Whitney Avenue, New Haven, Connecticut 06511, United States.
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Anthony Sarkiss
1Yale University, Department of Molecular, Cellular and Developmental Biology, Faculty of Arts and Sciences; 260 Whitney Avenue, New Haven, Connecticut 06511, United States.
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Yuzhao Hu
2Cold Spring Harbor Laboratory; Cold Spring Harbor, New York 11724, United States.
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Ullas V. Pedmale
2Cold Spring Harbor Laboratory; Cold Spring Harbor, New York 11724, United States.
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Yannick Jacob
1Yale University, Department of Molecular, Cellular and Developmental Biology, Faculty of Arts and Sciences; 260 Whitney Avenue, New Haven, Connecticut 06511, United States.
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  • For correspondence: yannick.jacob@yale.edu
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Abstract

Despite the broad array of roles for epigenetic mechanisms on regulating diverse processes in eukaryotes, no experimental system for the direct assessment of histone function is currently available in plants. In this work, we present the development of a genetic strategy in Arabidopsis thaliana in which modified H4 transgenes can completely replace the expression of endogenous histone H4. Using this strategy, we established a collection of plants expressing different H4 point mutants targeting residues that may be post-translationally modified in vivo. To demonstrate the utility of this new H4 mutant collection, we screened it to uncover substitutions in H4 that alter flowering time. We identified different mutations in the tail (H4R17A) and the globular domain (H4R36A, H4R39K, H4R39A, and H4K44A) of H4 that strongly accelerate the floral transition. Furthermore, we found a conserved regulatory relationship between H4R17 and the ISWI chromatin remodeling complex in plants. Similar to other biological systems, H4R17 regulates nucleosome spacing via ISWI. Overall, this work provides a large set of H4 mutants to the plant epigenetics community that can be used to systematically assess histone H4 function in A. thaliana and a roadmap to replicate this strategy for studying other histone proteins in plants.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • The author responsible for distribution of materials integral to the findings presented in this article in accordance with the policy described in the Instructions for Authors (www.plantcell.org) is: Yannick Jacob (yannick.jacob{at}yale.edu).

  • https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE190317

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted January 18, 2022.
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Systematic histone H4 replacement in Arabidopsis thaliana reveals a role for H4R17 in regulating flowering time
Emma Tung Corcoran, Chantal LeBlanc, Mia Arias Tsang, Anthony Sarkiss, Yuzhao Hu, Ullas V. Pedmale, Yannick Jacob
bioRxiv 2022.01.17.476649; doi: https://doi.org/10.1101/2022.01.17.476649
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Systematic histone H4 replacement in Arabidopsis thaliana reveals a role for H4R17 in regulating flowering time
Emma Tung Corcoran, Chantal LeBlanc, Mia Arias Tsang, Anthony Sarkiss, Yuzhao Hu, Ullas V. Pedmale, Yannick Jacob
bioRxiv 2022.01.17.476649; doi: https://doi.org/10.1101/2022.01.17.476649

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