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SARS-CoV-2 impairs interferon production via NSP2-induced repression of mRNA translation

Jung-Hyun Choi, Xu Zhang, Christine Zhang, David L. Dai, Jun Luo, Reese Ladak, Qian Li, Shane Wiebe, Alex C.H. Liu, Xiaozhuo Ran, Jiaqi Yang, Parisa Naeli, Aitor Garzia, Lele Zhou, Niaz Mahmood, Qiyun Deng, Mohamed Elaish, Rongtuan Lin, Tom Hobman, Jerry Pelletier, Tommy Alain, Silvia Vidal, Thomas Duchaine, Mohammad T. Mazhab-Jafari, Xiaojuan Mao, Seyed Mehdi Jafarnejad, Nahum Sonenberg
doi: https://doi.org/10.1101/2022.01.19.476693
Jung-Hyun Choi
1Rosalind and Morris Goodman Cancer Institute, McGill University, Montreal, Quebec, H3A 1A3, Canada
2Department of Biochemistry, McGill University, Montreal, Quebec, H3A 1A3, Canada
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Xu Zhang
1Rosalind and Morris Goodman Cancer Institute, McGill University, Montreal, Quebec, H3A 1A3, Canada
2Department of Biochemistry, McGill University, Montreal, Quebec, H3A 1A3, Canada
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Christine Zhang
3Department of Medical Microbiology, Faculty of Medicine, University of Manitoba, Canada
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David L. Dai
4Princess Margaret Cancer Centre, University Health Network, University of Toronto, Toronto, ON M5G 2C1, Canada
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Jun Luo
1Rosalind and Morris Goodman Cancer Institute, McGill University, Montreal, Quebec, H3A 1A3, Canada
2Department of Biochemistry, McGill University, Montreal, Quebec, H3A 1A3, Canada
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Reese Ladak
1Rosalind and Morris Goodman Cancer Institute, McGill University, Montreal, Quebec, H3A 1A3, Canada
2Department of Biochemistry, McGill University, Montreal, Quebec, H3A 1A3, Canada
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Qian Li
5Meakins-Christie Laboratories and Respiratory Division, McGill University, Montreal, Quebec, H4A 3J1, Canada
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Shane Wiebe
1Rosalind and Morris Goodman Cancer Institute, McGill University, Montreal, Quebec, H3A 1A3, Canada
2Department of Biochemistry, McGill University, Montreal, Quebec, H3A 1A3, Canada
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Alex C.H. Liu
4Princess Margaret Cancer Centre, University Health Network, University of Toronto, Toronto, ON M5G 2C1, Canada
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Xiaozhuo Ran
4Princess Margaret Cancer Centre, University Health Network, University of Toronto, Toronto, ON M5G 2C1, Canada
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Jiaqi Yang
4Princess Margaret Cancer Centre, University Health Network, University of Toronto, Toronto, ON M5G 2C1, Canada
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Parisa Naeli
6Patrick G Johnston Centre for Cancer Research, Queen’s University Belfast, Belfast, Northern Ireland, BT9 7AE, UK
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Aitor Garzia
7Laboratory for RNA Molecular Biology, The Rockefeller University, 1230 York Ave, Box 186, New York, NY 10065, USA
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Lele Zhou
1Rosalind and Morris Goodman Cancer Institute, McGill University, Montreal, Quebec, H3A 1A3, Canada
2Department of Biochemistry, McGill University, Montreal, Quebec, H3A 1A3, Canada
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Niaz Mahmood
1Rosalind and Morris Goodman Cancer Institute, McGill University, Montreal, Quebec, H3A 1A3, Canada
2Department of Biochemistry, McGill University, Montreal, Quebec, H3A 1A3, Canada
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Qiyun Deng
1Rosalind and Morris Goodman Cancer Institute, McGill University, Montreal, Quebec, H3A 1A3, Canada
2Department of Biochemistry, McGill University, Montreal, Quebec, H3A 1A3, Canada
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Mohamed Elaish
8Department of Cell Biology, University of Alberta, Edmonton, AB T6G 2H7, Canada
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Rongtuan Lin
9Lady Davis Institute, Department of Medicine, McGill University, Montreal, Quebec, H3T 1E2, Canada
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Tom Hobman
8Department of Cell Biology, University of Alberta, Edmonton, AB T6G 2H7, Canada
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Jerry Pelletier
1Rosalind and Morris Goodman Cancer Institute, McGill University, Montreal, Quebec, H3A 1A3, Canada
2Department of Biochemistry, McGill University, Montreal, Quebec, H3A 1A3, Canada
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Tommy Alain
10Children’s Hospital of Eastern Ontario Research Institute, Department of Biochemistry, Microbiology and Immunology, University of Ottawa, Ottawa, Ontario, K1H 5B2, Canada
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Silvia Vidal
11Department of Human Genetics, McGill University, Montreal, Quebec, Canada
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Thomas Duchaine
1Rosalind and Morris Goodman Cancer Institute, McGill University, Montreal, Quebec, H3A 1A3, Canada
2Department of Biochemistry, McGill University, Montreal, Quebec, H3A 1A3, Canada
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Mohammad T. Mazhab-Jafari
4Princess Margaret Cancer Centre, University Health Network, University of Toronto, Toronto, ON M5G 2C1, Canada
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Xiaojuan Mao
3Department of Medical Microbiology, Faculty of Medicine, University of Manitoba, Canada
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Seyed Mehdi Jafarnejad
6Patrick G Johnston Centre for Cancer Research, Queen’s University Belfast, Belfast, Northern Ireland, BT9 7AE, UK
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  • For correspondence: nahum.sonenberg@mcgill.ca sm.jafarnejad@qub.ac.uk
Nahum Sonenberg
1Rosalind and Morris Goodman Cancer Institute, McGill University, Montreal, Quebec, H3A 1A3, Canada
2Department of Biochemistry, McGill University, Montreal, Quebec, H3A 1A3, Canada
11Department of Human Genetics, McGill University, Montreal, Quebec, Canada
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  • For correspondence: nahum.sonenberg@mcgill.ca sm.jafarnejad@qub.ac.uk
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Abstract

Viruses evade the innate immune response by suppressing the production or activity of cytokines such as type I interferons (IFNs). Here we report the discovery of a novel mechanism by which the SARS-CoV-2 virus co-opts an intrinsic cellular machinery to suppress the production of the key immunostimulatory cytokine IFN-β. We reveal that the SARS-CoV-2 encoded Non-Structural Protein 2 (NSP2) directly interacts with the cellular GIGYF2 protein. This interaction enhances the binding of GIGYF2 to the mRNA cap-binding protein 4EHP, thereby repressing the translation of the Ifnb1 mRNA. Depletion of GIGYF2 or 4EHP significantly enhances IFN-β production, leading to reduced viral infection. Our findings reveal a new target for rescuing the antiviral innate immune response to SARS-CoV-2 and other RNA viruses.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • 11 Lead contact: N.S.: (nahum.sonenberg{at}mcgill.ca)

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted January 20, 2022.
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SARS-CoV-2 impairs interferon production via NSP2-induced repression of mRNA translation
Jung-Hyun Choi, Xu Zhang, Christine Zhang, David L. Dai, Jun Luo, Reese Ladak, Qian Li, Shane Wiebe, Alex C.H. Liu, Xiaozhuo Ran, Jiaqi Yang, Parisa Naeli, Aitor Garzia, Lele Zhou, Niaz Mahmood, Qiyun Deng, Mohamed Elaish, Rongtuan Lin, Tom Hobman, Jerry Pelletier, Tommy Alain, Silvia Vidal, Thomas Duchaine, Mohammad T. Mazhab-Jafari, Xiaojuan Mao, Seyed Mehdi Jafarnejad, Nahum Sonenberg
bioRxiv 2022.01.19.476693; doi: https://doi.org/10.1101/2022.01.19.476693
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SARS-CoV-2 impairs interferon production via NSP2-induced repression of mRNA translation
Jung-Hyun Choi, Xu Zhang, Christine Zhang, David L. Dai, Jun Luo, Reese Ladak, Qian Li, Shane Wiebe, Alex C.H. Liu, Xiaozhuo Ran, Jiaqi Yang, Parisa Naeli, Aitor Garzia, Lele Zhou, Niaz Mahmood, Qiyun Deng, Mohamed Elaish, Rongtuan Lin, Tom Hobman, Jerry Pelletier, Tommy Alain, Silvia Vidal, Thomas Duchaine, Mohammad T. Mazhab-Jafari, Xiaojuan Mao, Seyed Mehdi Jafarnejad, Nahum Sonenberg
bioRxiv 2022.01.19.476693; doi: https://doi.org/10.1101/2022.01.19.476693

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