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A chemical biology toolbox to investigate in-cell target engagement and specificity of PRMT5-inhibitors

View ORCID ProfileElisabeth M. Rothweiler, View ORCID ProfileJakub Stefaniak, View ORCID ProfileJennifer A. Ward, Catherine Rogers, Esra Balikci, View ORCID ProfileKilian V. M. Huber
doi: https://doi.org/10.1101/2022.01.20.477145
Elisabeth M. Rothweiler
1Centre for Medicines Discovery, Nuffield Department of Medicine, University of Oxford, Old Road Campus, Roosevelt Drive, Oxford OX3 7FZ, UK
2Target Discovery Institute, Nuffield Department of Medicine, University of Oxford, Old Road Campus, Roosevelt Drive, Oxford OX3 7FZ, UK
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Jakub Stefaniak
1Centre for Medicines Discovery, Nuffield Department of Medicine, University of Oxford, Old Road Campus, Roosevelt Drive, Oxford OX3 7FZ, UK
2Target Discovery Institute, Nuffield Department of Medicine, University of Oxford, Old Road Campus, Roosevelt Drive, Oxford OX3 7FZ, UK
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Jennifer A. Ward
1Centre for Medicines Discovery, Nuffield Department of Medicine, University of Oxford, Old Road Campus, Roosevelt Drive, Oxford OX3 7FZ, UK
2Target Discovery Institute, Nuffield Department of Medicine, University of Oxford, Old Road Campus, Roosevelt Drive, Oxford OX3 7FZ, UK
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Catherine Rogers
1Centre for Medicines Discovery, Nuffield Department of Medicine, University of Oxford, Old Road Campus, Roosevelt Drive, Oxford OX3 7FZ, UK
2Target Discovery Institute, Nuffield Department of Medicine, University of Oxford, Old Road Campus, Roosevelt Drive, Oxford OX3 7FZ, UK
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Esra Balikci
1Centre for Medicines Discovery, Nuffield Department of Medicine, University of Oxford, Old Road Campus, Roosevelt Drive, Oxford OX3 7FZ, UK
2Target Discovery Institute, Nuffield Department of Medicine, University of Oxford, Old Road Campus, Roosevelt Drive, Oxford OX3 7FZ, UK
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Kilian V. M. Huber
1Centre for Medicines Discovery, Nuffield Department of Medicine, University of Oxford, Old Road Campus, Roosevelt Drive, Oxford OX3 7FZ, UK
2Target Discovery Institute, Nuffield Department of Medicine, University of Oxford, Old Road Campus, Roosevelt Drive, Oxford OX3 7FZ, UK
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  • For correspondence: kilian.huber@cmd.ox.ac.uk
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Abstract

Increasing evidence suggests the protein arginine methyltransferase PRMT5 as a contributor to tumorigenesis in various cancer types and several inhibitors have entered clinical trials. Robust assays to determine cellular target engagement and selectivity are an important asset for the optimisation of inhibitors and the design of relevant in vivo studies. Here we report a suite of chemical biology assays enabling quantitative assessment of PRMT5 inhibitor in-cell target engagement and global selectivity profiling using a representative set of inhibitors. With the help of a bespoke cellular probe, we assess inhibitor target occupancy in cells in relation to biochemical and functional cellular assays. Investigating the influence of SAM, the natural cofactor of PRMT5, our results support the hypothesis that SAM positively contributes to the engagement of substrate-competitive inhibitors via a PRMT5:SAM:inhibitor ternary complex. Extensive proteomic profiling studies by drug affinity chromatography and thermal profiling further indicate high specificity of the clinical PRMT5 inhibitor GSK3326595 (pemrametostat).

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Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted January 22, 2022.
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A chemical biology toolbox to investigate in-cell target engagement and specificity of PRMT5-inhibitors
Elisabeth M. Rothweiler, Jakub Stefaniak, Jennifer A. Ward, Catherine Rogers, Esra Balikci, Kilian V. M. Huber
bioRxiv 2022.01.20.477145; doi: https://doi.org/10.1101/2022.01.20.477145
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A chemical biology toolbox to investigate in-cell target engagement and specificity of PRMT5-inhibitors
Elisabeth M. Rothweiler, Jakub Stefaniak, Jennifer A. Ward, Catherine Rogers, Esra Balikci, Kilian V. M. Huber
bioRxiv 2022.01.20.477145; doi: https://doi.org/10.1101/2022.01.20.477145

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