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Structure and Protein-Protein Interactions of Ice Nucleation Proteins Drive Their Activity

Susan Hartmann, Meilee Ling, Lasse S.A. Dreyer, Assaf Zipori, Kai Finster, Sarah Grawe, View ORCID ProfileLasse Z. Jensen, Stella Borck, Naama Reicher, Taner Drace, Dennis Niedermeier, Nykola C. Jones, Søren V. Hoffmann, Heike Wex, Yinon Rudich, View ORCID ProfileThomas Boesen, View ORCID ProfileTina Šantl-Temkiv
doi: https://doi.org/10.1101/2022.01.21.477219
Susan Hartmann
1Institute for Tropospheric Research, Permoserstraße 15, Leipzig, 04318, Germany
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Meilee Ling
2Department of Biology, Microbiology Section, Aarhus University, Ny Munkegade 114-116, Aarhus 8000, Denmark
3Department of Physics and Astronomy, Stellar Astrophysics Centre, Aarhus University, Ny Munkegade 120, Aarhus 8000, Denmark
4Department of Molecular Biology and Genetics, Section for Protein Science, Aarhus University, Gustav Wieds Vej 10 C, Aarhus 8000, Denmark
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Lasse S.A. Dreyer
4Department of Molecular Biology and Genetics, Section for Protein Science, Aarhus University, Gustav Wieds Vej 10 C, Aarhus 8000, Denmark
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Assaf Zipori
5Department of Earth and Planetary Sciences, Weizmann Institute of Science, Rehovot 76100, Israel
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Kai Finster
2Department of Biology, Microbiology Section, Aarhus University, Ny Munkegade 114-116, Aarhus 8000, Denmark
3Department of Physics and Astronomy, Stellar Astrophysics Centre, Aarhus University, Ny Munkegade 120, Aarhus 8000, Denmark
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Sarah Grawe
1Institute for Tropospheric Research, Permoserstraße 15, Leipzig, 04318, Germany
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Lasse Z. Jensen
2Department of Biology, Microbiology Section, Aarhus University, Ny Munkegade 114-116, Aarhus 8000, Denmark
3Department of Physics and Astronomy, Stellar Astrophysics Centre, Aarhus University, Ny Munkegade 120, Aarhus 8000, Denmark
4Department of Molecular Biology and Genetics, Section for Protein Science, Aarhus University, Gustav Wieds Vej 10 C, Aarhus 8000, Denmark
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  • ORCID record for Lasse Z. Jensen
Stella Borck
2Department of Biology, Microbiology Section, Aarhus University, Ny Munkegade 114-116, Aarhus 8000, Denmark
3Department of Physics and Astronomy, Stellar Astrophysics Centre, Aarhus University, Ny Munkegade 120, Aarhus 8000, Denmark
4Department of Molecular Biology and Genetics, Section for Protein Science, Aarhus University, Gustav Wieds Vej 10 C, Aarhus 8000, Denmark
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Naama Reicher
5Department of Earth and Planetary Sciences, Weizmann Institute of Science, Rehovot 76100, Israel
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Taner Drace
4Department of Molecular Biology and Genetics, Section for Protein Science, Aarhus University, Gustav Wieds Vej 10 C, Aarhus 8000, Denmark
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Dennis Niedermeier
1Institute for Tropospheric Research, Permoserstraße 15, Leipzig, 04318, Germany
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Nykola C. Jones
6ISA, Department of Physics and Astronomy, Aarhus University, Ny Munkegade 120, Aarhus 8000, Denmark
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Søren V. Hoffmann
6ISA, Department of Physics and Astronomy, Aarhus University, Ny Munkegade 120, Aarhus 8000, Denmark
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Heike Wex
1Institute for Tropospheric Research, Permoserstraße 15, Leipzig, 04318, Germany
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Yinon Rudich
5Department of Earth and Planetary Sciences, Weizmann Institute of Science, Rehovot 76100, Israel
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Thomas Boesen
4Department of Molecular Biology and Genetics, Section for Protein Science, Aarhus University, Gustav Wieds Vej 10 C, Aarhus 8000, Denmark
7Interdisciplinary Nanoscience Center, Aarhus University, Gustav Wieds Vej 14, Aarhus 8000, Denmark
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  • For correspondence: thb@inano.au.dk temkiv@bio.au.dk
Tina Šantl-Temkiv
2Department of Biology, Microbiology Section, Aarhus University, Ny Munkegade 114-116, Aarhus 8000, Denmark
3Department of Physics and Astronomy, Stellar Astrophysics Centre, Aarhus University, Ny Munkegade 120, Aarhus 8000, Denmark
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  • ORCID record for Tina Šantl-Temkiv
  • For correspondence: thb@inano.au.dk temkiv@bio.au.dk
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ABSTRACT

Microbially-produced ice nucleating proteins (INpro) are unique molecular structures with the highest known catalytic efficiency for ice formation. Their critical role in rain formation and frost damage of crops together with their diverse commercial applications warrant an in-depth under-standing of their inherent ice nucleation mechanism. We used the machine-learning based software Al-phaFold to develop the first ab initio structural model of a bacterial INpro which is a novel beta-helix structure consisting of repeated stacks of two beta strands connected by two sharp turns. Using the synchrotron radiation circular dichroism, we validated the β-strand content of the model. Combining functional studies of purified recombinant INpro, electron microscopy and modeling, we further demonstrate that the formation of dimers and higher-order oligomers is key to INpro activity. This work presents a major advance in understanding the molecular foundation for bacterial ice-nucleation activity and the basis for investigating the mechanistic role of INpro-induced ice formation in the atmosphere, and for commercial design and production of ice-nucleating particles for industrial applications.

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Posted January 22, 2022.
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Structure and Protein-Protein Interactions of Ice Nucleation Proteins Drive Their Activity
Susan Hartmann, Meilee Ling, Lasse S.A. Dreyer, Assaf Zipori, Kai Finster, Sarah Grawe, Lasse Z. Jensen, Stella Borck, Naama Reicher, Taner Drace, Dennis Niedermeier, Nykola C. Jones, Søren V. Hoffmann, Heike Wex, Yinon Rudich, Thomas Boesen, Tina Šantl-Temkiv
bioRxiv 2022.01.21.477219; doi: https://doi.org/10.1101/2022.01.21.477219
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Structure and Protein-Protein Interactions of Ice Nucleation Proteins Drive Their Activity
Susan Hartmann, Meilee Ling, Lasse S.A. Dreyer, Assaf Zipori, Kai Finster, Sarah Grawe, Lasse Z. Jensen, Stella Borck, Naama Reicher, Taner Drace, Dennis Niedermeier, Nykola C. Jones, Søren V. Hoffmann, Heike Wex, Yinon Rudich, Thomas Boesen, Tina Šantl-Temkiv
bioRxiv 2022.01.21.477219; doi: https://doi.org/10.1101/2022.01.21.477219

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