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Alteration of myocardial structure and function in RAF1-associated Noonan syndrome: Insights from cardiac disease modeling based on patient-derived iPSCs

View ORCID ProfileSaeideh Nakhaei-Rad, View ORCID ProfileFarhad Bazgir, View ORCID ProfileJulia Dahlmann, View ORCID ProfileAlexandra Viktoria Busley, View ORCID ProfileMarcel Buchholzer, Fereshteh Haghighi, View ORCID ProfileAnne Schänzer, View ORCID ProfileAndreas Hahn, View ORCID ProfileSebastian Kötter, View ORCID ProfileDenny Schanze, View ORCID ProfileRuchika Anand, View ORCID ProfileFlorian Funk, Andrea Borchardt, Annette Vera Kronenbitter, View ORCID ProfileJürgen Scheller, View ORCID ProfileRoland P. Piekorz, View ORCID ProfileAndreas S. Reichert, Marianne Volleth, View ORCID ProfileMatthew J. Wolf, View ORCID ProfileIon Cristian Cirstea, View ORCID ProfileBruce D. Gelb, View ORCID ProfileMarco Tartaglia, View ORCID ProfileJoachim Schmitt, View ORCID ProfileMartina Krüger, Ingo Kutschka, View ORCID ProfileLukas Cyganek, View ORCID ProfileMartin Zenker, View ORCID ProfileGeorge Kensah, View ORCID ProfileMohammad R. Ahmadian
doi: https://doi.org/10.1101/2022.01.22.477319
Saeideh Nakhaei-Rad
1Institute of Biochemistry and Molecular Biology II, Medical Faculty and University Hospital Düsseldorf, Heinrich Heine University Düsseldorf, Düsseldorf, Germany
16Saeideh Nakhaei-Rad, Stem Cell Biology and Regenerative Medicine Research Group, Institute of Biotechnology, Ferdowsi University of Mashhad, Mashhad, Iran; Julia Dahlmann, Leibniz Research Laboratories for Biotechnology and Artificial Organs (LEBAO), Department of Cardiac, Thoracic-, Transplantation and Vascular Surgery, REBIRTH-Research Center for Translational and Regenerative Medicine, Biomedical Research in Endstage and Obstructive Lung Disease (BREATH), German Center for Lung Research (DZL), Hannover Medical School, 30625 Hannover, Germany. Marcel Buchholzer, Institute for Molecular Physiology, Heinrich Heine University Düsseldorf, Düsseldorf 40225, Germany
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  • ORCID record for Saeideh Nakhaei-Rad
Farhad Bazgir
1Institute of Biochemistry and Molecular Biology II, Medical Faculty and University Hospital Düsseldorf, Heinrich Heine University Düsseldorf, Düsseldorf, Germany
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Julia Dahlmann
2Institute of Human Genetics, University Hospital, Otto von Guericke-University, Magdeburg, Germany
3Clinic for Cardiothoracic and Vascular Surgery, University Medical Center, Göttingen, Germany
16Saeideh Nakhaei-Rad, Stem Cell Biology and Regenerative Medicine Research Group, Institute of Biotechnology, Ferdowsi University of Mashhad, Mashhad, Iran; Julia Dahlmann, Leibniz Research Laboratories for Biotechnology and Artificial Organs (LEBAO), Department of Cardiac, Thoracic-, Transplantation and Vascular Surgery, REBIRTH-Research Center for Translational and Regenerative Medicine, Biomedical Research in Endstage and Obstructive Lung Disease (BREATH), German Center for Lung Research (DZL), Hannover Medical School, 30625 Hannover, Germany. Marcel Buchholzer, Institute for Molecular Physiology, Heinrich Heine University Düsseldorf, Düsseldorf 40225, Germany
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Alexandra Viktoria Busley
4Stem Cell Unit, Clinic for Cardiology and Pneumology, University Medical Center Göttingen, Göttingen, Germany
5German Center for Cardiovascular Research (DZHK), partner site Göttingen, Germany
6Cluster of Excellence “Multiscale Bioimaging: from Molecular Machines to Networks of Excitable Cells”, University of Göttingen, Germany
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Marcel Buchholzer
1Institute of Biochemistry and Molecular Biology II, Medical Faculty and University Hospital Düsseldorf, Heinrich Heine University Düsseldorf, Düsseldorf, Germany
16Saeideh Nakhaei-Rad, Stem Cell Biology and Regenerative Medicine Research Group, Institute of Biotechnology, Ferdowsi University of Mashhad, Mashhad, Iran; Julia Dahlmann, Leibniz Research Laboratories for Biotechnology and Artificial Organs (LEBAO), Department of Cardiac, Thoracic-, Transplantation and Vascular Surgery, REBIRTH-Research Center for Translational and Regenerative Medicine, Biomedical Research in Endstage and Obstructive Lung Disease (BREATH), German Center for Lung Research (DZL), Hannover Medical School, 30625 Hannover, Germany. Marcel Buchholzer, Institute for Molecular Physiology, Heinrich Heine University Düsseldorf, Düsseldorf 40225, Germany
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Fereshteh Haghighi
1Institute of Biochemistry and Molecular Biology II, Medical Faculty and University Hospital Düsseldorf, Heinrich Heine University Düsseldorf, Düsseldorf, Germany
3Clinic for Cardiothoracic and Vascular Surgery, University Medical Center, Göttingen, Germany
5German Center for Cardiovascular Research (DZHK), partner site Göttingen, Germany
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Anne Schänzer
7Institute of Neuropathology, Justus Liebig University Giessen, Giessen, Germany
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Andreas Hahn
8Department of Child Neurology, Justus Liebig University Giessen, 35392 Giessen, Germany
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  • ORCID record for Andreas Hahn
Sebastian Kötter
9Institute of Cardiovascular Physiology, Medical Faculty and University Hospital Düsseldorf, Heinrich Heine University Düsseldorf, Düsseldorf, Germany
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Denny Schanze
2Institute of Human Genetics, University Hospital, Otto von Guericke-University, Magdeburg, Germany
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Ruchika Anand
10Institute of Biochemistry and Molecular Biology I, Medical Faculty and University Hospital Düsseldorf, Heinrich Heine University Düsseldorf, Düsseldorf, Germany
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Florian Funk
11Institute of Pharmacology and Clinical Pharmacology, Medical Faculty and University Hospital Düsseldorf, Heinrich Heine University Düsseldorf, Düsseldorf, Germany
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Andrea Borchardt
10Institute of Biochemistry and Molecular Biology I, Medical Faculty and University Hospital Düsseldorf, Heinrich Heine University Düsseldorf, Düsseldorf, Germany
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Annette Vera Kronenbitter
11Institute of Pharmacology and Clinical Pharmacology, Medical Faculty and University Hospital Düsseldorf, Heinrich Heine University Düsseldorf, Düsseldorf, Germany
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Jürgen Scheller
1Institute of Biochemistry and Molecular Biology II, Medical Faculty and University Hospital Düsseldorf, Heinrich Heine University Düsseldorf, Düsseldorf, Germany
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Roland P. Piekorz
1Institute of Biochemistry and Molecular Biology II, Medical Faculty and University Hospital Düsseldorf, Heinrich Heine University Düsseldorf, Düsseldorf, Germany
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Andreas S. Reichert
10Institute of Biochemistry and Molecular Biology I, Medical Faculty and University Hospital Düsseldorf, Heinrich Heine University Düsseldorf, Düsseldorf, Germany
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Marianne Volleth
2Institute of Human Genetics, University Hospital, Otto von Guericke-University, Magdeburg, Germany
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Matthew J. Wolf
12Department of Medicine and Robert M. Berne Cardiovascular Research Center, University of Virginia, USA
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Ion Cristian Cirstea
13Institute of Comparative Molecular Endocrinology, University of Ulm, Helmholtzstrasse 8/1, 89081 Ulm, Germany
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Bruce D. Gelb
14Mindich Child Health and Development Institute and Departments of Pediatrics and Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA
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Marco Tartaglia
15Genetics and Rare Diseases Research Division, Ospedale Pediatrico Bambino Gesù, IRCCS, 00146 Rome, Italy
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Joachim Schmitt
11Institute of Pharmacology and Clinical Pharmacology, Medical Faculty and University Hospital Düsseldorf, Heinrich Heine University Düsseldorf, Düsseldorf, Germany
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Martina Krüger
9Institute of Cardiovascular Physiology, Medical Faculty and University Hospital Düsseldorf, Heinrich Heine University Düsseldorf, Düsseldorf, Germany
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Ingo Kutschka
3Clinic for Cardiothoracic and Vascular Surgery, University Medical Center, Göttingen, Germany
5German Center for Cardiovascular Research (DZHK), partner site Göttingen, Germany
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Lukas Cyganek
4Stem Cell Unit, Clinic for Cardiology and Pneumology, University Medical Center Göttingen, Göttingen, Germany
5German Center for Cardiovascular Research (DZHK), partner site Göttingen, Germany
6Cluster of Excellence “Multiscale Bioimaging: from Molecular Machines to Networks of Excitable Cells”, University of Göttingen, Germany
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Martin Zenker
2Institute of Human Genetics, University Hospital, Otto von Guericke-University, Magdeburg, Germany
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  • For correspondence: reza.ahmadian@uni-duesseldorf.de george.kensah@med.uni-goettingen.de martin.zenker@med.ovgu.de
George Kensah
3Clinic for Cardiothoracic and Vascular Surgery, University Medical Center, Göttingen, Germany
5German Center for Cardiovascular Research (DZHK), partner site Göttingen, Germany
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  • For correspondence: reza.ahmadian@uni-duesseldorf.de george.kensah@med.uni-goettingen.de martin.zenker@med.ovgu.de
Mohammad R. Ahmadian
1Institute of Biochemistry and Molecular Biology II, Medical Faculty and University Hospital Düsseldorf, Heinrich Heine University Düsseldorf, Düsseldorf, Germany
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  • For correspondence: reza.ahmadian@uni-duesseldorf.de george.kensah@med.uni-goettingen.de martin.zenker@med.ovgu.de
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Abstract

Noonan syndrome (NS), the most common among the RASopathies, is caused by germline variants in genes encoding components of the RAS-MAPK pathway. Distinct variants, including the recurrent Ser257Leu substitution in RAF1, are associated with severe hypertrophic cardiomyopathy (HCM). Here, we investigated the elusive mechanistic link between NS-associated RAF1S257L and HCM using three-dimensional cardiac bodies and bioartificial cardiac tissues generated from patient-derived induced pluripotent stem cells (iPSCs) harboring the pathogenic RAF1 c.770C>T missense change. We characterize the molecular, structural and functional consequences of aberrant RAF1 –associated signaling on the cardiac models. Ultrastructural assessment of the sarcomere revealed a shortening of the I-bands along the Z disc area in both iPSC-derived RAF1S257L cardiomyocytes, and myocardial tissue biopsies. The disease phenotype was partly reverted by using both MEK inhibition, and a gene-corrected isogenic RAF1L257S cell line. Collectively, our findings uncovered a direct link between a RASopathy gene variant and the abnormal sarcomere structure resulting in a cardiac dysfunction that remarkably recapitulates the human disease. These insights represent a basis to develop future targeted therapeutic approaches.

Competing Interest Statement

The authors have declared no competing interest.

  • Abbreviations

    AC
    adenylyl cyclase
    ACTN1
    actinin alpha 1
    APF
    alpha fetoprotein
    α-SMA
    alpha smooth muscle actin
    BNP
    brain natriuretic peptide
    CACNA1C
    calcium voltage-gated channel subunit alpha1 C
    CB
    cardiac body
    CT
    cardiac tissue
    CM
    cardiomyocytes
    cTNT
    cardiac troponin T
    DUSP1
    dual-specificity phosphatase
    EB
    embryoid body
    EBNA1
    Epstein-Barr nuclear antigen 1
    EM
    electron microscopy
    ERK
    extracellular regulated kinase
    FOXOA2
    forkhead box A2
    GSK3β
    glycogen synthase kinase 3 beta
    HCM
    hypertrophic cardiomyopathy
    HDAC
    histone deacetylase
    HPRT1
    hypoxanthine-guanine phosphoribosyltransferase
    LTCC
    L-type calcium channels
    MAPK
    mitogen-activated protein kinase
    MEF2
    myocyte enhancer factor 2
    MEK
    MAP/ERK kinase
    MEKi
    MAP/ERK kinase inhibitor
    MYH
    myosin heavy chain
    MYL
    myosin light chain 7
    iPSC
    induced pluripotent stem cells
    NFAT
    nuclear factor of activated T-cells
    NC
    nocodazole
    NKX2.5
    NK2 homeobox 5
    NPPB
    natriuretic peptide B
    NS
    Noonan syndrome
    OCT-4
    octamer-binding transcription factor 4
    PE
    phenylephrine
    p-H3
    phosphohistone 3
    PLN
    phospholamban
    RAF
    rapidly accelerated fibrosarcoma
    RT-PCR
    reverse transcriptase polymerase chain
    RyR2
    ryanodine receptor type-2
    SERCA2A
    sarco/endoplasmic reticulum Ca2+-ATPase
    SOX2
    SRY-box transcription factor 2
    TNNC1
    troponin C1
    TNNI3
    troponin I3, cardiac type
    TRP53
    transformation related protein 53
    TUBB3
    tubulin beta 3 class III
    WT
    wild-type.
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    Alteration of myocardial structure and function in RAF1-associated Noonan syndrome: Insights from cardiac disease modeling based on patient-derived iPSCs
    Saeideh Nakhaei-Rad, Farhad Bazgir, Julia Dahlmann, Alexandra Viktoria Busley, Marcel Buchholzer, Fereshteh Haghighi, Anne Schänzer, Andreas Hahn, Sebastian Kötter, Denny Schanze, Ruchika Anand, Florian Funk, Andrea Borchardt, Annette Vera Kronenbitter, Jürgen Scheller, Roland P. Piekorz, Andreas S. Reichert, Marianne Volleth, Matthew J. Wolf, Ion Cristian Cirstea, Bruce D. Gelb, Marco Tartaglia, Joachim Schmitt, Martina Krüger, Ingo Kutschka, Lukas Cyganek, Martin Zenker, George Kensah, Mohammad R. Ahmadian
    bioRxiv 2022.01.22.477319; doi: https://doi.org/10.1101/2022.01.22.477319
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    Alteration of myocardial structure and function in RAF1-associated Noonan syndrome: Insights from cardiac disease modeling based on patient-derived iPSCs
    Saeideh Nakhaei-Rad, Farhad Bazgir, Julia Dahlmann, Alexandra Viktoria Busley, Marcel Buchholzer, Fereshteh Haghighi, Anne Schänzer, Andreas Hahn, Sebastian Kötter, Denny Schanze, Ruchika Anand, Florian Funk, Andrea Borchardt, Annette Vera Kronenbitter, Jürgen Scheller, Roland P. Piekorz, Andreas S. Reichert, Marianne Volleth, Matthew J. Wolf, Ion Cristian Cirstea, Bruce D. Gelb, Marco Tartaglia, Joachim Schmitt, Martina Krüger, Ingo Kutschka, Lukas Cyganek, Martin Zenker, George Kensah, Mohammad R. Ahmadian
    bioRxiv 2022.01.22.477319; doi: https://doi.org/10.1101/2022.01.22.477319

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