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Non-Invasive classification of macrophage polarisation by 2P-FLIM and machine learning

Nuno G.B. Neto, Sinead A. O’Rourke, Mimi Zhang, Hannah K. Fitzgerald, Aisling Dunne, Michael G. Monaghan
doi: https://doi.org/10.1101/2022.01.22.477332
Nuno G.B. Neto
1Department of Mechanical, Manufacturing and Biomedical Engineering, Trinity College Dublin, Dublin, Ireland
2Trinity Centre for Biomedical Engineering, Trinity Biomedical Science Institute, Trinity College Dublin, Dublin, Ireland
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Sinead A. O’Rourke
1Department of Mechanical, Manufacturing and Biomedical Engineering, Trinity College Dublin, Dublin, Ireland
2Trinity Centre for Biomedical Engineering, Trinity Biomedical Science Institute, Trinity College Dublin, Dublin, Ireland
3School of Biochemistry & Immunology and School of Medicine, Trinity Biomedical Science Institute, Trinity College Dublin, Dublin, Ireland
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Mimi Zhang
4School of Computer Science and Statistics, Trinity College Dublin, Ireland
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Hannah K. Fitzgerald
3School of Biochemistry & Immunology and School of Medicine, Trinity Biomedical Science Institute, Trinity College Dublin, Dublin, Ireland
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Aisling Dunne
3School of Biochemistry & Immunology and School of Medicine, Trinity Biomedical Science Institute, Trinity College Dublin, Dublin, Ireland
5Advanced Materials for BioEngineering Research (AMBER) Centre, Trinity College Dublin and Royal College of Surgeons in Ireland, Dublin, Ireland
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Michael G. Monaghan
1Department of Mechanical, Manufacturing and Biomedical Engineering, Trinity College Dublin, Dublin, Ireland
2Trinity Centre for Biomedical Engineering, Trinity Biomedical Science Institute, Trinity College Dublin, Dublin, Ireland
5Advanced Materials for BioEngineering Research (AMBER) Centre, Trinity College Dublin and Royal College of Surgeons in Ireland, Dublin, Ireland
6CURAM SFI Research Centre for Medical Devices, National University of Ireland, Galway, Ireland
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  • For correspondence: micymon@gmail.com
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1. Abstract

In this study, fluorescence lifetime imaging of NAD(P)H-based cellular autofluorescence is applied as a non-invasive modality to classify two contrasting states of human macrophages by proxy of their governing metabolic state. Macrophages were obtained from human blood-circulating monocytes, polarised using established treatments, and metabolically challenged using small molecules to validate their responding metabolic actions in extracellular acidification and oxygen consumption. Fluorescence lifetime imaging microscopy (FLIM) quantified variations in NAD(P)H-derived fluorescent lifetimes in large field-of-view images of individual polarised macrophages also challenged, in real-time with small molecule perturbations of metabolism during imaging. We uncover FLIM parameters that are pronounced under the action of carbonyl cyanide-p-trifluoromethoxyphenylhydrazone (FCCP) which strongly stratifies the phenotype of polarised human macrophages. This stratification and parameters emanating from a FLIM approach, served as the basis for machine learning models. Applying a random forest model, identified three strongly governing FLIM parameters, achieving a ROC AUC value of 0.944 when classifying human macrophages.

Competing Interest Statement

The authors have declared no competing interest.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted January 23, 2022.
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Non-Invasive classification of macrophage polarisation by 2P-FLIM and machine learning
Nuno G.B. Neto, Sinead A. O’Rourke, Mimi Zhang, Hannah K. Fitzgerald, Aisling Dunne, Michael G. Monaghan
bioRxiv 2022.01.22.477332; doi: https://doi.org/10.1101/2022.01.22.477332
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Non-Invasive classification of macrophage polarisation by 2P-FLIM and machine learning
Nuno G.B. Neto, Sinead A. O’Rourke, Mimi Zhang, Hannah K. Fitzgerald, Aisling Dunne, Michael G. Monaghan
bioRxiv 2022.01.22.477332; doi: https://doi.org/10.1101/2022.01.22.477332

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