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Keystone species determine the productivity of synthetic microbial biofilm communities

View ORCID ProfileXinli Sun, Jiyu Xie, Daoyue Zheng, Riyan Xia, Wei Wang, Weibing Xun, Qiwei Huang, Ruifu Zhang, View ORCID ProfileÁkos T. Kovács, View ORCID ProfileZhihui Xu, Qirong Shen
doi: https://doi.org/10.1101/2022.01.23.477386
Xinli Sun
1Jiangsu Provincial Key Lab of Solid Organic Waste Utilization, Jiangsu Collaborative Innovation Center of Solid Organic Wastes, Educational Ministry Engineering Center of Resource-Saving Fertilizers, The Key Laboratory of Plant Immunity, Nanjing Agricultural University, 210095 Nanjing, Jiangsu, Peoples R China
2Bacterial Interactions and Evolution Group, DTU Bioengineering, Technical University of Denmark, 2800 Kongens Lyngby, Denmark
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Jiyu Xie
1Jiangsu Provincial Key Lab of Solid Organic Waste Utilization, Jiangsu Collaborative Innovation Center of Solid Organic Wastes, Educational Ministry Engineering Center of Resource-Saving Fertilizers, The Key Laboratory of Plant Immunity, Nanjing Agricultural University, 210095 Nanjing, Jiangsu, Peoples R China
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Daoyue Zheng
1Jiangsu Provincial Key Lab of Solid Organic Waste Utilization, Jiangsu Collaborative Innovation Center of Solid Organic Wastes, Educational Ministry Engineering Center of Resource-Saving Fertilizers, The Key Laboratory of Plant Immunity, Nanjing Agricultural University, 210095 Nanjing, Jiangsu, Peoples R China
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Riyan Xia
1Jiangsu Provincial Key Lab of Solid Organic Waste Utilization, Jiangsu Collaborative Innovation Center of Solid Organic Wastes, Educational Ministry Engineering Center of Resource-Saving Fertilizers, The Key Laboratory of Plant Immunity, Nanjing Agricultural University, 210095 Nanjing, Jiangsu, Peoples R China
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Wei Wang
1Jiangsu Provincial Key Lab of Solid Organic Waste Utilization, Jiangsu Collaborative Innovation Center of Solid Organic Wastes, Educational Ministry Engineering Center of Resource-Saving Fertilizers, The Key Laboratory of Plant Immunity, Nanjing Agricultural University, 210095 Nanjing, Jiangsu, Peoples R China
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Weibing Xun
1Jiangsu Provincial Key Lab of Solid Organic Waste Utilization, Jiangsu Collaborative Innovation Center of Solid Organic Wastes, Educational Ministry Engineering Center of Resource-Saving Fertilizers, The Key Laboratory of Plant Immunity, Nanjing Agricultural University, 210095 Nanjing, Jiangsu, Peoples R China
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Qiwei Huang
1Jiangsu Provincial Key Lab of Solid Organic Waste Utilization, Jiangsu Collaborative Innovation Center of Solid Organic Wastes, Educational Ministry Engineering Center of Resource-Saving Fertilizers, The Key Laboratory of Plant Immunity, Nanjing Agricultural University, 210095 Nanjing, Jiangsu, Peoples R China
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Ruifu Zhang
1Jiangsu Provincial Key Lab of Solid Organic Waste Utilization, Jiangsu Collaborative Innovation Center of Solid Organic Wastes, Educational Ministry Engineering Center of Resource-Saving Fertilizers, The Key Laboratory of Plant Immunity, Nanjing Agricultural University, 210095 Nanjing, Jiangsu, Peoples R China
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Ákos T. Kovács
2Bacterial Interactions and Evolution Group, DTU Bioengineering, Technical University of Denmark, 2800 Kongens Lyngby, Denmark
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  • For correspondence: xzh2068@njau.edu.cn atkovacs@dtu.dk
Zhihui Xu
1Jiangsu Provincial Key Lab of Solid Organic Waste Utilization, Jiangsu Collaborative Innovation Center of Solid Organic Wastes, Educational Ministry Engineering Center of Resource-Saving Fertilizers, The Key Laboratory of Plant Immunity, Nanjing Agricultural University, 210095 Nanjing, Jiangsu, Peoples R China
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  • For correspondence: xzh2068@njau.edu.cn atkovacs@dtu.dk
Qirong Shen
1Jiangsu Provincial Key Lab of Solid Organic Waste Utilization, Jiangsu Collaborative Innovation Center of Solid Organic Wastes, Educational Ministry Engineering Center of Resource-Saving Fertilizers, The Key Laboratory of Plant Immunity, Nanjing Agricultural University, 210095 Nanjing, Jiangsu, Peoples R China
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Abstract

Microbes typically reside in multi-species communities, whose interactions have considerable impacts on the robustness and functionality of such communities. To manage microbial communities, it is essential to understand the factors driving their assemblage and maintenance. Even though the community composition could be easily assessed, interspecies interactions during community establishment remain poorly understood. Here, we combined co-occurrence network analysis with quantitative PCR to examine the importance of each species within synthetic communities (SynComs) of pellicle biofilms. Genome-scale metabolic models and in vitro experiments indicated that the biomass of SynComs was primarily affected by keystone species that are acting either as metabolic facilitators or as competitors. Our study sets an example of how to construct a model SynCom and investigate interspecies interactions.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • We have incorporated most of the feedback received from the reviewers in the revised manuscript and provided new data in response to their requests.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted December 01, 2022.
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Keystone species determine the productivity of synthetic microbial biofilm communities
Xinli Sun, Jiyu Xie, Daoyue Zheng, Riyan Xia, Wei Wang, Weibing Xun, Qiwei Huang, Ruifu Zhang, Ákos T. Kovács, Zhihui Xu, Qirong Shen
bioRxiv 2022.01.23.477386; doi: https://doi.org/10.1101/2022.01.23.477386
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Keystone species determine the productivity of synthetic microbial biofilm communities
Xinli Sun, Jiyu Xie, Daoyue Zheng, Riyan Xia, Wei Wang, Weibing Xun, Qiwei Huang, Ruifu Zhang, Ákos T. Kovács, Zhihui Xu, Qirong Shen
bioRxiv 2022.01.23.477386; doi: https://doi.org/10.1101/2022.01.23.477386

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