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Discovery of S-217622, a Non-Covalent Oral SARS-CoV-2 3CL Protease Inhibitor Clinical Candidate for Treating COVID-19

View ORCID ProfileYuto Unoh, View ORCID ProfileShota Uehara, View ORCID ProfileKenji Nakahara, View ORCID ProfileHaruaki Nobori, Yukiko Yamatsu, View ORCID ProfileShiho Yamamoto, View ORCID ProfileYuki Maruyama, View ORCID ProfileYoshiyuki Taoda, View ORCID ProfileKoji Kasamatsu, View ORCID ProfileTakahiro Suto, Kensuke Kouki, View ORCID ProfileAtsufumi Nakahashi, Sho Kawashima, View ORCID ProfileTakao Sanaki, Shinsuke Toba, Kentaro Uemura, Tohru Mizutare, View ORCID ProfileShigeru Ando, View ORCID ProfileMichihito Sasaki, View ORCID ProfileYasuko Orba, View ORCID ProfileHirofumi Sawa, View ORCID ProfileAkihiko Sato, View ORCID ProfileTakafumi Sato, View ORCID ProfileTeruhisa Kato, View ORCID ProfileYuki Tachibana
doi: https://doi.org/10.1101/2022.01.26.477782
Yuto Unoh
1Shionogi Pharmaceutical Research Center, 3-1-1 Futaba-cho, Toyonaka, Osaka, Japan
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  • ORCID record for Yuto Unoh
Shota Uehara
1Shionogi Pharmaceutical Research Center, 3-1-1 Futaba-cho, Toyonaka, Osaka, Japan
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Kenji Nakahara
1Shionogi Pharmaceutical Research Center, 3-1-1 Futaba-cho, Toyonaka, Osaka, Japan
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Haruaki Nobori
1Shionogi Pharmaceutical Research Center, 3-1-1 Futaba-cho, Toyonaka, Osaka, Japan
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Yukiko Yamatsu
1Shionogi Pharmaceutical Research Center, 3-1-1 Futaba-cho, Toyonaka, Osaka, Japan
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Shiho Yamamoto
1Shionogi Pharmaceutical Research Center, 3-1-1 Futaba-cho, Toyonaka, Osaka, Japan
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Yuki Maruyama
1Shionogi Pharmaceutical Research Center, 3-1-1 Futaba-cho, Toyonaka, Osaka, Japan
2International Institute for Zoonosis Control, Hokkaido University, Sapporo, Japan
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Yoshiyuki Taoda
1Shionogi Pharmaceutical Research Center, 3-1-1 Futaba-cho, Toyonaka, Osaka, Japan
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Koji Kasamatsu
1Shionogi Pharmaceutical Research Center, 3-1-1 Futaba-cho, Toyonaka, Osaka, Japan
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Takahiro Suto
1Shionogi Pharmaceutical Research Center, 3-1-1 Futaba-cho, Toyonaka, Osaka, Japan
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Kensuke Kouki
1Shionogi Pharmaceutical Research Center, 3-1-1 Futaba-cho, Toyonaka, Osaka, Japan
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Atsufumi Nakahashi
1Shionogi Pharmaceutical Research Center, 3-1-1 Futaba-cho, Toyonaka, Osaka, Japan
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Sho Kawashima
1Shionogi Pharmaceutical Research Center, 3-1-1 Futaba-cho, Toyonaka, Osaka, Japan
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Takao Sanaki
1Shionogi Pharmaceutical Research Center, 3-1-1 Futaba-cho, Toyonaka, Osaka, Japan
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Shinsuke Toba
1Shionogi Pharmaceutical Research Center, 3-1-1 Futaba-cho, Toyonaka, Osaka, Japan
2International Institute for Zoonosis Control, Hokkaido University, Sapporo, Japan
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Kentaro Uemura
1Shionogi Pharmaceutical Research Center, 3-1-1 Futaba-cho, Toyonaka, Osaka, Japan
2International Institute for Zoonosis Control, Hokkaido University, Sapporo, Japan
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Tohru Mizutare
1Shionogi Pharmaceutical Research Center, 3-1-1 Futaba-cho, Toyonaka, Osaka, Japan
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Shigeru Ando
1Shionogi Pharmaceutical Research Center, 3-1-1 Futaba-cho, Toyonaka, Osaka, Japan
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Michihito Sasaki
2International Institute for Zoonosis Control, Hokkaido University, Sapporo, Japan
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Yasuko Orba
2International Institute for Zoonosis Control, Hokkaido University, Sapporo, Japan
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Hirofumi Sawa
2International Institute for Zoonosis Control, Hokkaido University, Sapporo, Japan
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  • ORCID record for Hirofumi Sawa
Akihiko Sato
1Shionogi Pharmaceutical Research Center, 3-1-1 Futaba-cho, Toyonaka, Osaka, Japan
2International Institute for Zoonosis Control, Hokkaido University, Sapporo, Japan
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Takafumi Sato
1Shionogi Pharmaceutical Research Center, 3-1-1 Futaba-cho, Toyonaka, Osaka, Japan
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Teruhisa Kato
1Shionogi Pharmaceutical Research Center, 3-1-1 Futaba-cho, Toyonaka, Osaka, Japan
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Yuki Tachibana
1Shionogi Pharmaceutical Research Center, 3-1-1 Futaba-cho, Toyonaka, Osaka, Japan
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  • ORCID record for Yuki Tachibana
  • For correspondence: yuuki.tachibana@shionogi.co.jp
  • Abstract
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Abstract

The coronavirus disease 2019 (COVID-19) pandemic, caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), has resulted in millions of deaths and threatens public health and safety. Despite the rapid global spread of COVID-19 vaccines, effective oral antiviral drugs are urgently needed. Here, we describe the discovery of S-217622, the first oral non-covalent, non-peptidic SARS-CoV-2 3CL protease inhibitor clinical candidate. S-217622 was discovered via virtual screening followed by biological screening of an in-house compound library, and optimization of the hit compound using a structure-based drug-design strategy. S-217622 exhibited antiviral activity in vitro against current outbreaking SARS-CoV-2 variants and showed favorable pharmacokinetic profiles in vivo for once-daily oral dosing. Furthermore, S-217622 dose-dependently inhibited intrapulmonary replication of SARS-CoV-2 in mice, indicating that this novel non-covalent inhibitor could be a potential oral agent for treating COVID-19.

Competing Interest Statement

Y.U., S.U., K.N., H.N., Y.Y., S.Y., Y.M., Y.T., K.K., T.S., K.K., A.N., S.K., T.S., S.T., K.U., T.M., S.A., A.S., T.S., T.K., and Y.T. are employees of SHIONOGI & Co., Ltd. S.U., K.N., H.N., Y.M., Y.T., K.K., T.S., K.K., S.K., TS, S.T., K.U., T.S., and T.K. are shareholders in SHIONOGI & Co., Ltd. M.S., Y.O., and H.S. are financially supported by the joint research fund from SHIONOGI & Co., Ltd.

  • Abbreviations

    CDI
    N,N’-carbonyldiimidazole
    DBU
    1,8-diazabicyclo[5.4.0]-7-undecene
    DMA
    N,N-dimethylacetamide
    DMEM
    dulbecco’s modified eagle medium
    DMSO
    dimethyl sulfoxide
    DTT
    1,4-dithiothreitol
    ESI
    electrospray ionization
    EtOAc
    ethyl acetate
    HATU
    1-[bis(dimethylamino)methylene]-1H-1,2,3-triazolo[4,5-b]pyridinium 3-oxide hexafluorophosphate
    LCMS
    liquid chromatography mass spectrometry
    LHMDS
    lithium bis(trimethylsilyl)amide
    HRMS
    high resolution mass spectrometry
    MeCN
    acetonitrile
    TFA
    trifluoroacetic acid
    THF
    tetrahydrofuran.
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    Posted January 26, 2022.
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    Discovery of S-217622, a Non-Covalent Oral SARS-CoV-2 3CL Protease Inhibitor Clinical Candidate for Treating COVID-19
    Yuto Unoh, Shota Uehara, Kenji Nakahara, Haruaki Nobori, Yukiko Yamatsu, Shiho Yamamoto, Yuki Maruyama, Yoshiyuki Taoda, Koji Kasamatsu, Takahiro Suto, Kensuke Kouki, Atsufumi Nakahashi, Sho Kawashima, Takao Sanaki, Shinsuke Toba, Kentaro Uemura, Tohru Mizutare, Shigeru Ando, Michihito Sasaki, Yasuko Orba, Hirofumi Sawa, Akihiko Sato, Takafumi Sato, Teruhisa Kato, Yuki Tachibana
    bioRxiv 2022.01.26.477782; doi: https://doi.org/10.1101/2022.01.26.477782
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    Discovery of S-217622, a Non-Covalent Oral SARS-CoV-2 3CL Protease Inhibitor Clinical Candidate for Treating COVID-19
    Yuto Unoh, Shota Uehara, Kenji Nakahara, Haruaki Nobori, Yukiko Yamatsu, Shiho Yamamoto, Yuki Maruyama, Yoshiyuki Taoda, Koji Kasamatsu, Takahiro Suto, Kensuke Kouki, Atsufumi Nakahashi, Sho Kawashima, Takao Sanaki, Shinsuke Toba, Kentaro Uemura, Tohru Mizutare, Shigeru Ando, Michihito Sasaki, Yasuko Orba, Hirofumi Sawa, Akihiko Sato, Takafumi Sato, Teruhisa Kato, Yuki Tachibana
    bioRxiv 2022.01.26.477782; doi: https://doi.org/10.1101/2022.01.26.477782

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