maxATAC: genome-scale transcription-factor binding prediction from ATAC-seq with deep neural networks

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View ORCID ProfileTareian Cazares, View ORCID ProfileFaiz W. Rizvi, Balaji Iyer, View ORCID ProfileXiaoting Chen, View ORCID ProfileMichael Kotliar, Joseph A. Wayman, Anthony Bejjani, View ORCID ProfileOmer Donmez, View ORCID ProfileBenjamin Wronowski, Sreeja Parameswaran, View ORCID ProfileLeah C. Kottyan, View ORCID ProfileArtem Barski, View ORCID ProfileMatthew T. Weirauch, View ORCID ProfileVB Surya Prasath, View ORCID ProfileEmily R. Miraldi

doi: https://doi.org/10.1101/2022.01.28.478235

Tareian Cazares

1Immunology Graduate Program, University of Cincinnati College of Medicine, Cincinnati, OH 45229, USA

Faiz W. Rizvi

2Department of Pharmacology and Systems Biology Graduate Program, University of Cincinnati College of Medicine, Cincinnati, OH, 45229, USA

Balaji Iyer

3Division of Biomedical Informatics, Cincinnati Children’s Hospital Medical Center, Cincinnati, OH, 45229, USA

4Department of Electrical Engineering and Computer Science, University of Cincinnati, OH 45221, USA

Xiaoting Chen

5The Center for Autoimmune Genetics and Etiology (CAGE), Cincinnati Children’s Hospital Medical Center, Cincinnati, OH, 45229, USA

Michael Kotliar

6Division of Allergy and Immunology, Cincinnati Children’s Hospital Medical Center, Cincinnati, OH, 45229, USA

Joseph A. Wayman

7Division of Immunobiology, Cincinnati Children’s Hospital Medical Center, Cincinnati, OH, 45229, USA

Anthony Bejjani

8Molecular and Developmental Biology Graduate Program, University of Cincinnati College of Medicine, Cincinnati, OH 45229, USA

Omer Donmez

5The Center for Autoimmune Genetics and Etiology (CAGE), Cincinnati Children’s Hospital Medical Center, Cincinnati, OH, 45229, USA

Benjamin Wronowski

6Division of Allergy and Immunology, Cincinnati Children’s Hospital Medical Center, Cincinnati, OH, 45229, USA

Sreeja Parameswaran

5The Center for Autoimmune Genetics and Etiology (CAGE), Cincinnati Children’s Hospital Medical Center, Cincinnati, OH, 45229, USA

Leah C. Kottyan

5The Center for Autoimmune Genetics and Etiology (CAGE), Cincinnati Children’s Hospital Medical Center, Cincinnati, OH, 45229, USA