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A novel nematode species from the Siberian permafrost shares adaptive mechanisms for cryptobiotic survival with C. elegans dauer larva

Anastasia Shatilovich, View ORCID ProfileVamshidhar R. Gade, View ORCID ProfileMartin Pippel, Tarja T. Hoffmeyer, Alexei V. Tchesunov, Lewis Stevens, Sylke Winkler, Graham M. Hughes, Sofia Traikov, Michael Hiller, Elizaveta Rivkina, Philipp H. Schiffer, Eugene W Myers, Teymuras V. Kurzchalia
doi: https://doi.org/10.1101/2022.01.28.478251
Anastasia Shatilovich
1Institute of Physicochemical and Biological Problems in Soil Science RAS, Pushchino, Russia
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Vamshidhar R. Gade
2Max Planck Institute for Molecular Cell Biology and Genetics, Dresden, Germany
9Institute of Biochemistry, ETH Zürich, 8093 Zürich, Switzerland
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  • ORCID record for Vamshidhar R. Gade
Martin Pippel
3Center for Systems Biology, Dresden, Germany
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Tarja T. Hoffmeyer
4Institute for Zoology, University of Cologne
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Alexei V. Tchesunov
5Department of Invertebrate Zoology, Faculty of Biology, M.V. Lomonosov Moscow State University, Moscow, Russia
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Lewis Stevens
6Tree of Life, Wellcome Sanger Institute, Cambridge, UK
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Sylke Winkler
2Max Planck Institute for Molecular Cell Biology and Genetics, Dresden, Germany
7DRESDEN concept Genome Center, Dresden, Germany
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Graham M. Hughes
8School of Biology and Environmental Science, University College Dublin, Belfield, Dublin, Ireland
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Sofia Traikov
2Max Planck Institute for Molecular Cell Biology and Genetics, Dresden, Germany
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Michael Hiller
3Center for Systems Biology, Dresden, Germany
10LOEWE Centre for Translational Biodiversity Genomics, Senckenberg Society for Nature Research & Goethe University, Frankfurt am Main, Germany
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Elizaveta Rivkina
1Institute of Physicochemical and Biological Problems in Soil Science RAS, Pushchino, Russia
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Philipp H. Schiffer
4Institute for Zoology, University of Cologne
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  • For correspondence: kurzchalia@mpi-cbg.de p.schiffer@uni-koeln.de
Eugene W Myers
3Center for Systems Biology, Dresden, Germany
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Teymuras V. Kurzchalia
2Max Planck Institute for Molecular Cell Biology and Genetics, Dresden, Germany
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  • For correspondence: kurzchalia@mpi-cbg.de p.schiffer@uni-koeln.de
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Abstract

Some organisms in nature have developed the ability to enter a state of suspended metabolism called cryptobiosis1 when environmental conditions are unfavorable. This state-transition requires execution of a combination of genetic and biochemical pathways1,2,3 that enable the organism to survive for prolonged periods. Recently, nematode individuals have been reanimated from Siberian permafrost after remaining in cryptobiosis. Preliminary analysis indicates that these nematodes belong to the genera Panagrolaimus and Plectus4. Here, we present precise radiocarbon dating indicating that the Panagrolaimus individuals have remained in cryptobiosis since the late Pleistocene (∼46,000 years). Phylogenetic inference based on our genome assembly and a detailed morphological analysis demonstrate that they belong to an undescribed species, which we named Panagrolaimus n. sp. Comparative genome analysis revealed that the molecular toolkit for cryptobiosis in Panagrolaimus n. sp. and in C. elegans is partly orthologous. We show that biochemical mechanisms employed by these two species to survive desiccation and freezing under laboratory conditions are similar. Our experimental evidence also reveals that C. elegans dauer larvae can remain viable for longer periods in suspended animation than previously reported. Altogether, our findings demonstrate that nematodes evolved mechanisms potentially allowing them to suspend life over geological time scales.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • This version of the manuscript has been revised to update the minor revisions the reviewers suggested.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission.
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Posted January 24, 2023.
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A novel nematode species from the Siberian permafrost shares adaptive mechanisms for cryptobiotic survival with C. elegans dauer larva
Anastasia Shatilovich, Vamshidhar R. Gade, Martin Pippel, Tarja T. Hoffmeyer, Alexei V. Tchesunov, Lewis Stevens, Sylke Winkler, Graham M. Hughes, Sofia Traikov, Michael Hiller, Elizaveta Rivkina, Philipp H. Schiffer, Eugene W Myers, Teymuras V. Kurzchalia
bioRxiv 2022.01.28.478251; doi: https://doi.org/10.1101/2022.01.28.478251
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A novel nematode species from the Siberian permafrost shares adaptive mechanisms for cryptobiotic survival with C. elegans dauer larva
Anastasia Shatilovich, Vamshidhar R. Gade, Martin Pippel, Tarja T. Hoffmeyer, Alexei V. Tchesunov, Lewis Stevens, Sylke Winkler, Graham M. Hughes, Sofia Traikov, Michael Hiller, Elizaveta Rivkina, Philipp H. Schiffer, Eugene W Myers, Teymuras V. Kurzchalia
bioRxiv 2022.01.28.478251; doi: https://doi.org/10.1101/2022.01.28.478251

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