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Multiphasic hepatitis B virus kinetic patterns in humanized chimeric mice can be explained via stochastic agent-based modeling of intracellular virion production cycles

Atesmachew Hailegiorgis, Yuji Ishida, Nicholson Collier, Michio Imamura, Zhenzhen Shi, Vladimir Reinharz, Masataka Tsuge, Danny Barash, Nobuhiko Hiraga, Hiroshi Yokomichi, Chise Tateno, Jonathan Ozik, Susan L. Uprichard, Kazuaki Chayama, Harel Dahari
doi: https://doi.org/10.1101/2022.01.30.478385
Atesmachew Hailegiorgis
1The Program for Experimental & Theoretical Modeling, Division of Hepatology, Department of Medicine, Stritch School of Medicine, Loyola University Chicago, Maywood, IL, USA
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Yuji Ishida
2PhoenixBio Co., Ltd., Hiroshima, Japan
3Research Center for Hepatology and Gastroenterology, Hiroshima University, Hiroshima, Japan
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Nicholson Collier
4Consortium for Advanced Science and Engineering, University of Chicago, Chicago, IL
5Decision and Infrastructure Sciences, Argonne National Laboratory, Argonne, IL, USA
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Michio Imamura
3Research Center for Hepatology and Gastroenterology, Hiroshima University, Hiroshima, Japan
6Department of Gastroenterology and Metabolism, Institute of Biomedical and Health Sciences, Hiroshima University, Hiroshima, Japan
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Zhenzhen Shi
1The Program for Experimental & Theoretical Modeling, Division of Hepatology, Department of Medicine, Stritch School of Medicine, Loyola University Chicago, Maywood, IL, USA
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Vladimir Reinharz
7Department of Computer Science, Université du Québec à Montréal, Montreal, QC H3C 3P8, Canada
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Masataka Tsuge
1The Program for Experimental & Theoretical Modeling, Division of Hepatology, Department of Medicine, Stritch School of Medicine, Loyola University Chicago, Maywood, IL, USA
3Research Center for Hepatology and Gastroenterology, Hiroshima University, Hiroshima, Japan
8Natural Science Center for Basic Research and Development, Hiroshima University, 1-2-3 Kasumi, Minami-ku, Hiroshima 734-8551, Japan
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Danny Barash
9Department of Computer Science, Ben-Gurion University, Beer-Sheva, Israel
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Nobuhiko Hiraga
3Research Center for Hepatology and Gastroenterology, Hiroshima University, Hiroshima, Japan
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Hiroshi Yokomichi
2PhoenixBio Co., Ltd., Hiroshima, Japan
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Chise Tateno
2PhoenixBio Co., Ltd., Hiroshima, Japan
3Research Center for Hepatology and Gastroenterology, Hiroshima University, Hiroshima, Japan
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Jonathan Ozik
4Consortium for Advanced Science and Engineering, University of Chicago, Chicago, IL
5Decision and Infrastructure Sciences, Argonne National Laboratory, Argonne, IL, USA
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Susan L. Uprichard
1The Program for Experimental & Theoretical Modeling, Division of Hepatology, Department of Medicine, Stritch School of Medicine, Loyola University Chicago, Maywood, IL, USA
10The Infectious Disease and Immunology Research Institute, Stritch School of Medicine, Loyola University Chicago, Maywood, IL, USA
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Kazuaki Chayama
3Research Center for Hepatology and Gastroenterology, Hiroshima University, Hiroshima, Japan
11RIKEN Center for Integrative Medical Sciences, Yokohama, Japan
12Collaborative Research Laboratory of Medical Innovation, Graduate School of Biomedical and Health Sciences, Hiroshima University, Hiroshima, Japan
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  • For correspondence: chayama@hiroshima-u.ac.jp hdahari@luc.edu
Harel Dahari
1The Program for Experimental & Theoretical Modeling, Division of Hepatology, Department of Medicine, Stritch School of Medicine, Loyola University Chicago, Maywood, IL, USA
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  • For correspondence: chayama@hiroshima-u.ac.jp hdahari@luc.edu
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Abstract

Serum hepatitis B virus (HBV) kinetics in urokinase-type plasminogen activator/severe combined immunodeficient (uPA-SCID) mice reconstituted with humanized livers from inoculation to steady state is highly dynamic despite the absence of an adaptive immune response. We developed a stochastic agent-based model that includes virion production cycles in individual infected human hepatocytes. The model was calibrated using a genetic algorithm approach with the serum HBV kinetics observed in mice inoculated with 108 HBV genome equivalents and fit the data well when the following viral production parameters were assumed: (1) An eclipse phase lasting 5-50 hours and (2) a post-eclipse phase production rate that is based on increasing production cycles initially starting with a long production cycle of 1 virion per 20 hours that gradually reaches 1 virion per hour after approximately 3-4 days before virion production increases dramatically to reach to a steady state production rate of 4 virions per hour per cell. The model was then validated by showing it could accurately simulate the viral kinetics observed with lower HBV inoculation doses (104-107 genome equivalents) in which similar, but delayed patterns were observed. Together, modeling suggests that it is the cyclic nature of the virus lifecycle combined with an initial slow but increasing rate of HBV production from each cell that plays a role in generating the observed multiphasic HBV kinetic patterns in humanized mice.

Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-ND 4.0 International license.
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Posted January 30, 2022.
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Multiphasic hepatitis B virus kinetic patterns in humanized chimeric mice can be explained via stochastic agent-based modeling of intracellular virion production cycles
Atesmachew Hailegiorgis, Yuji Ishida, Nicholson Collier, Michio Imamura, Zhenzhen Shi, Vladimir Reinharz, Masataka Tsuge, Danny Barash, Nobuhiko Hiraga, Hiroshi Yokomichi, Chise Tateno, Jonathan Ozik, Susan L. Uprichard, Kazuaki Chayama, Harel Dahari
bioRxiv 2022.01.30.478385; doi: https://doi.org/10.1101/2022.01.30.478385
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Multiphasic hepatitis B virus kinetic patterns in humanized chimeric mice can be explained via stochastic agent-based modeling of intracellular virion production cycles
Atesmachew Hailegiorgis, Yuji Ishida, Nicholson Collier, Michio Imamura, Zhenzhen Shi, Vladimir Reinharz, Masataka Tsuge, Danny Barash, Nobuhiko Hiraga, Hiroshi Yokomichi, Chise Tateno, Jonathan Ozik, Susan L. Uprichard, Kazuaki Chayama, Harel Dahari
bioRxiv 2022.01.30.478385; doi: https://doi.org/10.1101/2022.01.30.478385

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