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Sentinel Cards Provide Practical SARS-CoV-2 Monitoring in School Settings

Victor J Cantú, Karenina Sanders, Pedro Belda-Ferre, View ORCID ProfileRodolfo A Salido, Rebecca Tsai, Brett Austin, William Jordan, Menka Asudani, Amanda Walster, Celestine G. Magallanes, Holly Valentine, Araz Manjoonian, Carrissa Wijaya, Vinton Omaleki, Stefan Aigner, Nathan A Baer, Maryann Betty, Anelizze Castro-Martínez, Willi Cheung, Peter De Hoff, Emily Eisner, Abbas Hakim, Alma L Lastrella, Elijah S Lawrence, Toan T Ngo, Tyler Ostrander, Ashley Plascencia, Shashank Sathe, Elizabeth W Smoot, View ORCID ProfileAaron F Carlin, Gene W Yeo, Louise C Laurent, Anna Liza Manlutac, Rebecca Fielding-Miller, Rob Knight
doi: https://doi.org/10.1101/2022.02.01.478759
Victor J Cantú
1Department of Bioengineering, University of California, San Diego, La Jolla, CA 92093, USA
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Karenina Sanders
2Department of Pediatrics, University of California San Diego, La Jolla, CA
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Pedro Belda-Ferre
2Department of Pediatrics, University of California San Diego, La Jolla, CA
3Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California San Diego, La Jolla, CA
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Rodolfo A Salido
1Department of Bioengineering, University of California, San Diego, La Jolla, CA 92093, USA
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Rebecca Tsai
2Department of Pediatrics, University of California San Diego, La Jolla, CA
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Brett Austin
4San Diego County Public Health Lab, San Diego, CA
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William Jordan
4San Diego County Public Health Lab, San Diego, CA
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Menka Asudani
4San Diego County Public Health Lab, San Diego, CA
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Amanda Walster
4San Diego County Public Health Lab, San Diego, CA
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Celestine G. Magallanes
5Department of Obstetrics, Gynecology, and Reproductive Sciences, University of California San Diego, USA
6Sanford Consortium of Regenerative Medicine, University of California San Diego, La Jolla, CA
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Holly Valentine
5Department of Obstetrics, Gynecology, and Reproductive Sciences, University of California San Diego, USA
6Sanford Consortium of Regenerative Medicine, University of California San Diego, La Jolla, CA
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Araz Manjoonian
7Herbert Wertheim School of Public Health, University of California, San Diego 9500 Gilman Drive, La Jolla, CA 92093
8San Diego State University, San Diego, CA
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Carrissa Wijaya
7Herbert Wertheim School of Public Health, University of California, San Diego 9500 Gilman Drive, La Jolla, CA 92093
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Vinton Omaleki
7Herbert Wertheim School of Public Health, University of California, San Diego 9500 Gilman Drive, La Jolla, CA 92093
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Stefan Aigner
3Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California San Diego, La Jolla, CA
6Sanford Consortium of Regenerative Medicine, University of California San Diego, La Jolla, CA
9Dept of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA
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Nathan A Baer
3Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California San Diego, La Jolla, CA
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Maryann Betty
2Department of Pediatrics, University of California San Diego, La Jolla, CA
3Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California San Diego, La Jolla, CA
10Rady Children’s Hospital, San Diego, CA
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Anelizze Castro-Martínez
3Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California San Diego, La Jolla, CA
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Willi Cheung
3Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California San Diego, La Jolla, CA
6Sanford Consortium of Regenerative Medicine, University of California San Diego, La Jolla, CA
8San Diego State University, San Diego, CA
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Peter De Hoff
3Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California San Diego, La Jolla, CA
5Department of Obstetrics, Gynecology, and Reproductive Sciences, University of California San Diego, USA
6Sanford Consortium of Regenerative Medicine, University of California San Diego, La Jolla, CA
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Emily Eisner
3Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California San Diego, La Jolla, CA
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Abbas Hakim
3Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California San Diego, La Jolla, CA
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Alma L Lastrella
3Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California San Diego, La Jolla, CA
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Elijah S Lawrence
3Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California San Diego, La Jolla, CA
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Toan T Ngo
3Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California San Diego, La Jolla, CA
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Tyler Ostrander
3Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California San Diego, La Jolla, CA
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Ashley Plascencia
3Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California San Diego, La Jolla, CA
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Shashank Sathe
3Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California San Diego, La Jolla, CA
6Sanford Consortium of Regenerative Medicine, University of California San Diego, La Jolla, CA
9Dept of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA
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Elizabeth W Smoot
3Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California San Diego, La Jolla, CA
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Aaron F Carlin
11Division of Infectious Diseases and Global Public Health, Department of Medicine; University of California San Diego School of Medicine, 9500 Gilman Drive, La Jolla, California 92093, USA
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  • ORCID record for Aaron F Carlin
Gene W Yeo
3Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California San Diego, La Jolla, CA
6Sanford Consortium of Regenerative Medicine, University of California San Diego, La Jolla, CA
9Dept of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA
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Louise C Laurent
5Department of Obstetrics, Gynecology, and Reproductive Sciences, University of California San Diego, USA
6Sanford Consortium of Regenerative Medicine, University of California San Diego, La Jolla, CA
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Anna Liza Manlutac
4San Diego County Public Health Lab, San Diego, CA
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Rebecca Fielding-Miller
7Herbert Wertheim School of Public Health, University of California, San Diego 9500 Gilman Drive, La Jolla, CA 92093
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Rob Knight
1Department of Bioengineering, University of California, San Diego, La Jolla, CA 92093, USA
12Department of Computer Science and Engineering, University of California San Diego, La Jolla, CA, USA
13Center for Microbiome Innovation, Jacobs School of Engineering, University of California San Diego, La Jolla, CA, USA
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  • For correspondence: rknight@health.ucsd.edu
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Abstract

Accurate, high-resolution environmental monitoring of SARS-CoV-2 traces indoors through sentinel cards is a promising approach to help students safely return to in-person learning. Because SARS-CoV-2 RNA can persist for up to a week on several indoor surface types, there is a need for increased temporal resolution to determine whether consecutive surface positives arise from new infection events or continue to report past events. Cleaning sentinel cards after sampling would provide the needed resolution, but might interfere with assay performance. We tested the effect of three cleaning solutions (BZK wipes, wet wipes, RNase Away) at three different viral loads: “high” (4 x 104 GE/mL), “medium” (1 x 104 GE/mL), and “low” (2.5 x 103 GE/mL). RNAse Away, chosen as a positive control, was the most effective cleaning solution on all three viral loads. Wet wipes were found to be more effective than BZK wipes in the medium viral load condition. The low viral load condition was easily reset with all three cleaning solutions. These findings will enable temporal SARS-CoV-2 monitoring in indoor environments where transmission risk of the virus is high and the need to avoid individual-level sampling for privacy or compliance reasons exists.

Importance Because SARS-CoV-2, the virus that causes COVID-19, persists on surfaces, testing swabs taken from surfaces is useful as a monitoring tool. This approach is especially valuable in school settings, where there are cost and privacy concerns that are eliminated by taking a single sample from a classroom. However, the virus persists for days to weeks on surface samples, so it is impossible to tell whether positive detection events on consecutive days are persistent signal or new infectious cases, and therefore whether the positive individuals have been successfully removed from the classroom. We compare several methods for cleaning “sentinel cards” to show that this approach can be used to identify new SARS-CoV-2 signals day to day. The results are important for determining how to monitor classrooms and other indoor environments for SARS-CoV-2 virus.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted February 03, 2022.
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Sentinel Cards Provide Practical SARS-CoV-2 Monitoring in School Settings
Victor J Cantú, Karenina Sanders, Pedro Belda-Ferre, Rodolfo A Salido, Rebecca Tsai, Brett Austin, William Jordan, Menka Asudani, Amanda Walster, Celestine G. Magallanes, Holly Valentine, Araz Manjoonian, Carrissa Wijaya, Vinton Omaleki, Stefan Aigner, Nathan A Baer, Maryann Betty, Anelizze Castro-Martínez, Willi Cheung, Peter De Hoff, Emily Eisner, Abbas Hakim, Alma L Lastrella, Elijah S Lawrence, Toan T Ngo, Tyler Ostrander, Ashley Plascencia, Shashank Sathe, Elizabeth W Smoot, Aaron F Carlin, Gene W Yeo, Louise C Laurent, Anna Liza Manlutac, Rebecca Fielding-Miller, Rob Knight
bioRxiv 2022.02.01.478759; doi: https://doi.org/10.1101/2022.02.01.478759
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Sentinel Cards Provide Practical SARS-CoV-2 Monitoring in School Settings
Victor J Cantú, Karenina Sanders, Pedro Belda-Ferre, Rodolfo A Salido, Rebecca Tsai, Brett Austin, William Jordan, Menka Asudani, Amanda Walster, Celestine G. Magallanes, Holly Valentine, Araz Manjoonian, Carrissa Wijaya, Vinton Omaleki, Stefan Aigner, Nathan A Baer, Maryann Betty, Anelizze Castro-Martínez, Willi Cheung, Peter De Hoff, Emily Eisner, Abbas Hakim, Alma L Lastrella, Elijah S Lawrence, Toan T Ngo, Tyler Ostrander, Ashley Plascencia, Shashank Sathe, Elizabeth W Smoot, Aaron F Carlin, Gene W Yeo, Louise C Laurent, Anna Liza Manlutac, Rebecca Fielding-Miller, Rob Knight
bioRxiv 2022.02.01.478759; doi: https://doi.org/10.1101/2022.02.01.478759

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