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Autism in a dish: ES cell models of autism with copy number variations reveal cell-type-specific vulnerability

View ORCID ProfileJun Nomura, Amila Zuko, Keiko Kishimoto, Hiroaki Mutsumine, Kazumi Fukatsu, Yoshiko Nomura, Xiaoxi Liu, Nobuhiro Nakai, ES library team, Eiki Takahashi, Tsukasa Kouno, Jay W. Shin, View ORCID ProfileToru Takumi
doi: https://doi.org/10.1101/2022.02.02.478766
Jun Nomura
1RIKEN Brain Science Institute, Wako, Saitama 351-0198, Japan
2Department of Physiology and Cell Biology, Kobe University School of Medicine, Chuo, Kobe 650-0017, Japan
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  • ORCID record for Jun Nomura
Amila Zuko
1RIKEN Brain Science Institute, Wako, Saitama 351-0198, Japan
3Department of Molecular Neurobiology, Donders Institute for Brain, Cognition and Behaviour and Faculty of Science, Radboud University, Nijmegen 6525JA, Netherlands
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Keiko Kishimoto
1RIKEN Brain Science Institute, Wako, Saitama 351-0198, Japan
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Hiroaki Mutsumine
1RIKEN Brain Science Institute, Wako, Saitama 351-0198, Japan
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Kazumi Fukatsu
1RIKEN Brain Science Institute, Wako, Saitama 351-0198, Japan
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Yoshiko Nomura
1RIKEN Brain Science Institute, Wako, Saitama 351-0198, Japan
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Xiaoxi Liu
1RIKEN Brain Science Institute, Wako, Saitama 351-0198, Japan
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Nobuhiro Nakai
1RIKEN Brain Science Institute, Wako, Saitama 351-0198, Japan
2Department of Physiology and Cell Biology, Kobe University School of Medicine, Chuo, Kobe 650-0017, Japan
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Eiki Takahashi
1RIKEN Brain Science Institute, Wako, Saitama 351-0198, Japan
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Tsukasa Kouno
4RIKEN Center for Integrative Medical Sciences, Tsurumi, Yokohama 230-0045, Japan
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Jay W. Shin
4RIKEN Center for Integrative Medical Sciences, Tsurumi, Yokohama 230-0045, Japan
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Toru Takumi
1RIKEN Brain Science Institute, Wako, Saitama 351-0198, Japan
2Department of Physiology and Cell Biology, Kobe University School of Medicine, Chuo, Kobe 650-0017, Japan
5RIKEN Center for Biosystems Dynamics Research, Chuo, Kobe 650-0047, Japan
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  • ORCID record for Toru Takumi
  • For correspondence: takumit@med.kobe-u.ac.jp
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SUMMARY

Human genetics has identified numerous single nucleotide variations (SNVs) and copy number variations (CNVs) associated with autism spectrum disorders (ASD) and other psychiatric disorders. However, the lack of standardized biological resources impedes understanding of the common pathophysiology of ASD. Here, using next-generation chromosome engineering based on the CRISPR/Cas9 system, we established a biological resource including 65 genetically modified mouse embryonic stem cell (mESC) lines as genetic models of human SNVs and CNVs. To illustrate cell-type and CNV specific molecular features of ASD, we performed single-cell RNA sequencing (37,397 cells in total), morphological, and physiological analyses using 12 representative cell lines with CNVs highly associated with ASD. These results uncover gene ontology (GO) terms, canonical pathways, upstream regulators, and related neuropsychiatric disorders in a cell-type and CNV specific manner.

Competing Interest Statement

The authors have declared no competing interest.

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Posted February 02, 2022.
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Autism in a dish: ES cell models of autism with copy number variations reveal cell-type-specific vulnerability
Jun Nomura, Amila Zuko, Keiko Kishimoto, Hiroaki Mutsumine, Kazumi Fukatsu, Yoshiko Nomura, Xiaoxi Liu, Nobuhiro Nakai, ES library team, Eiki Takahashi, Tsukasa Kouno, Jay W. Shin, Toru Takumi
bioRxiv 2022.02.02.478766; doi: https://doi.org/10.1101/2022.02.02.478766
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Autism in a dish: ES cell models of autism with copy number variations reveal cell-type-specific vulnerability
Jun Nomura, Amila Zuko, Keiko Kishimoto, Hiroaki Mutsumine, Kazumi Fukatsu, Yoshiko Nomura, Xiaoxi Liu, Nobuhiro Nakai, ES library team, Eiki Takahashi, Tsukasa Kouno, Jay W. Shin, Toru Takumi
bioRxiv 2022.02.02.478766; doi: https://doi.org/10.1101/2022.02.02.478766

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