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VE607 Stabilizes SARS-CoV-2 Spike In the “RBD-up” Conformation and Inhibits Viral Entry

Shilei Ding, Shang Yu Gong, Jonathan Grover, Mohammadjavad Mohammadi, Yaozong Chen, Dani Vézina, Guillaume Beaudoin-Bussières, Vijay Tailor Verma, Guillaume Goyette, Jonathan Richard, Derek Yang, Amos B. Smith III, Marzena Pazgier, Marceline Côté, Cameron Abrams, Walther Mothes, Andrés Finzi, Christian Baron
doi: https://doi.org/10.1101/2022.02.03.479007
Shilei Ding
1Centre de recherche du CHUM, Montréal, QC, Canada
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Shang Yu Gong
1Centre de recherche du CHUM, Montréal, QC, Canada
2Department of Microbiology and Immunology, McGill University, Montreal, QC, Canada
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Jonathan Grover
3Department of Microbial Pathogenesis, Yale University School of Medicine, New Haven, CT 06510, USA
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Mohammadjavad Mohammadi
4Department of Biochemistry and Molecular Biology, Drexel University College of Medicine, Philadelphia, PA 19104, USA
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Yaozong Chen
5Infectious Disease Division, Department of Medicine, Uniformed Services University of the Health Sciences, Bethesda, MD 20814-4712, USA
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Dani Vézina
1Centre de recherche du CHUM, Montréal, QC, Canada
6Département de Microbiologie, Infectiologie et Immunologie, Université de Montréal, Montréal, QC, Canada
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Guillaume Beaudoin-Bussières
1Centre de recherche du CHUM, Montréal, QC, Canada
6Département de Microbiologie, Infectiologie et Immunologie, Université de Montréal, Montréal, QC, Canada
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Vijay Tailor Verma
7Department of Biochemistry and Molecular Medicine, Université de Montréal, Montréal, QC, Canada
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Guillaume Goyette
1Centre de recherche du CHUM, Montréal, QC, Canada
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Jonathan Richard
1Centre de recherche du CHUM, Montréal, QC, Canada
6Département de Microbiologie, Infectiologie et Immunologie, Université de Montréal, Montréal, QC, Canada
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Derek Yang
8Department of Chemistry, School of Arts and Sciences, University of Pennsylvania, Philadelphia, PA, USA
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Amos B. Smith III
8Department of Chemistry, School of Arts and Sciences, University of Pennsylvania, Philadelphia, PA, USA
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Marzena Pazgier
5Infectious Disease Division, Department of Medicine, Uniformed Services University of the Health Sciences, Bethesda, MD 20814-4712, USA
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Marceline Côté
9Department of Biochemistry, Microbiology and Immunology, and Center for Infection, Immunity, and Inflammation, University of Ottawa, Ottawa, ON K1H 8M5, Canada
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Cameron Abrams
4Department of Biochemistry and Molecular Biology, Drexel University College of Medicine, Philadelphia, PA 19104, USA
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Walther Mothes
3Department of Microbial Pathogenesis, Yale University School of Medicine, New Haven, CT 06510, USA
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Andrés Finzi
1Centre de recherche du CHUM, Montréal, QC, Canada
2Department of Microbiology and Immunology, McGill University, Montreal, QC, Canada
6Département de Microbiologie, Infectiologie et Immunologie, Université de Montréal, Montréal, QC, Canada
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  • For correspondence: andres.finzi@umontreal.ca christian.baron@umontreal.ca
Christian Baron
7Department of Biochemistry and Molecular Medicine, Université de Montréal, Montréal, QC, Canada
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  • For correspondence: andres.finzi@umontreal.ca christian.baron@umontreal.ca
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Summary

SARS-CoV-2 infection of host cells starts by binding of the Spike glycoprotein (S) to the ACE2 receptor. The S-ACE2 interaction is a potential target for therapies against COVID-19 as demonstrated by the development of immunotherapies blocking this interaction. Here, we present the commercially available VE607, comprised of three stereoisomers, that was originally described as an inhibitor of SARS-CoV-1. We show that VE607 specifically inhibits infection of SARS-CoV-1 and SARS-CoV-2 S-expressing pseudoviral particles as well as authentic SARS-CoV-2. VE607 stabilizes the receptor binding domain (RBD) in its “up” conformation. In silico docking and mutational analysis map the VE607 binding site at the RBD-ACE2 interface. The IC50 values are in the low micromolar range for pseudoparticles derived from SARS-CoV-2 Wuhan/D614G as well as from variants of concern (Alpha, Beta, Gamma, Delta and Omicron), suggesting that VE607 has potential for the development of drugs against SARS-CoV-2 infections.

Competing Interest Statement

The authors have declared no competing interest.

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Posted February 04, 2022.
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VE607 Stabilizes SARS-CoV-2 Spike In the “RBD-up” Conformation and Inhibits Viral Entry
Shilei Ding, Shang Yu Gong, Jonathan Grover, Mohammadjavad Mohammadi, Yaozong Chen, Dani Vézina, Guillaume Beaudoin-Bussières, Vijay Tailor Verma, Guillaume Goyette, Jonathan Richard, Derek Yang, Amos B. Smith III, Marzena Pazgier, Marceline Côté, Cameron Abrams, Walther Mothes, Andrés Finzi, Christian Baron
bioRxiv 2022.02.03.479007; doi: https://doi.org/10.1101/2022.02.03.479007
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VE607 Stabilizes SARS-CoV-2 Spike In the “RBD-up” Conformation and Inhibits Viral Entry
Shilei Ding, Shang Yu Gong, Jonathan Grover, Mohammadjavad Mohammadi, Yaozong Chen, Dani Vézina, Guillaume Beaudoin-Bussières, Vijay Tailor Verma, Guillaume Goyette, Jonathan Richard, Derek Yang, Amos B. Smith III, Marzena Pazgier, Marceline Côté, Cameron Abrams, Walther Mothes, Andrés Finzi, Christian Baron
bioRxiv 2022.02.03.479007; doi: https://doi.org/10.1101/2022.02.03.479007

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