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DisPhaseDB, an integrative database of diseases related variations in liquid-liquid phase separation proteins

View ORCID ProfileAlvaro Navarro, View ORCID ProfileFernando Orti, View ORCID ProfileElizabeth Martínez-Pérez, View ORCID ProfileFranco Simonetti, View ORCID ProfileJavier Iserte, View ORCID ProfileCristina Marino-Buslje
doi: https://doi.org/10.1101/2022.02.03.479026
Alvaro Navarro
1Fundación Instituto Leloir. Av. Patricias Argentinas 435, C1405BWE, Buenos Aires, Argentina
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  • ORCID record for Alvaro Navarro
Fernando Orti
1Fundación Instituto Leloir. Av. Patricias Argentinas 435, C1405BWE, Buenos Aires, Argentina
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Elizabeth Martínez-Pérez
1Fundación Instituto Leloir. Av. Patricias Argentinas 435, C1405BWE, Buenos Aires, Argentina
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  • ORCID record for Elizabeth Martínez-Pérez
Franco Simonetti
1Fundación Instituto Leloir. Av. Patricias Argentinas 435, C1405BWE, Buenos Aires, Argentina
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Javier Iserte
1Fundación Instituto Leloir. Av. Patricias Argentinas 435, C1405BWE, Buenos Aires, Argentina
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  • For correspondence: jiserte@leloir.org.ar cmb@leloir.org.ar
Cristina Marino-Buslje
1Fundación Instituto Leloir. Av. Patricias Argentinas 435, C1405BWE, Buenos Aires, Argentina
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  • For correspondence: jiserte@leloir.org.ar cmb@leloir.org.ar
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Abstract

Motivation Proteins involved in liquid-liquid phase separation (LLPS) and membraneless organelles (MLOs) are recognized to be decisive for many biological processes and also responsible for several diseases. The recent explosion of research in the area still lacks tools for the analysis and data integration among different repositories. Currently, there is not a comprehensive and dedicated database that collects all disease-related variations in combination with the protein location, biological role in the MLO and all the metadata available for each protein and disease. Disease related protein variants and additional features are dispersed and the user has to navigate many databases, with different focus, formats and often not user friendly.

Results We present DisPhaseDB, a database dedicated to disease related variants of LLPS proteins and/or are involved in MLOs. It integrates 10 databases, contains 5.741 proteins, 1.660.059 variants and 4.051 disease terms. It also offers intuitive navigation and an informative display. It constitutes a pivotal starting point for further analysis, encouraging the development of new computational tools.

Availability and Implementation The database is freely available at http://disphasedb.leloir.org.ar.

Contact jiserte{at}leloir.org.ar and cmb{at}leloir.org.ar

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Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • https://disphasedb.leloir.org.ar

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY 4.0 International license.
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Posted February 06, 2022.
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DisPhaseDB, an integrative database of diseases related variations in liquid-liquid phase separation proteins
Alvaro Navarro, Fernando Orti, Elizabeth Martínez-Pérez, Franco Simonetti, Javier Iserte, Cristina Marino-Buslje
bioRxiv 2022.02.03.479026; doi: https://doi.org/10.1101/2022.02.03.479026
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DisPhaseDB, an integrative database of diseases related variations in liquid-liquid phase separation proteins
Alvaro Navarro, Fernando Orti, Elizabeth Martínez-Pérez, Franco Simonetti, Javier Iserte, Cristina Marino-Buslje
bioRxiv 2022.02.03.479026; doi: https://doi.org/10.1101/2022.02.03.479026

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