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Coupling comprehensive pesticide-wide association study to iPSC dopaminergic screening identifies and classifies Parkinson-relevant pesticides

View ORCID ProfileKimberly C Paul, View ORCID ProfileRichard C Krolewski, View ORCID ProfileEdinson Lucumi Moreno, Jack Blank, Kris Holton, Tim Ahfeldt, Melissa Furlong, Yu Yu, Myles Cockburn, Laura K Thompson, Jeff Bronstein, View ORCID ProfileLee L. Rubin, View ORCID ProfileVikram Khurana, View ORCID ProfileBeate Ritz
doi: https://doi.org/10.1101/2022.02.06.479305
Kimberly C Paul
1Department of Neurology, UCLA David Geffen School of Medicine, Los Angeles, California, USA
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Richard C Krolewski
2Department of Neurology, Brigham and Women’s Hospital, Boston, MA, USA
3Department of Stem Cell and Regenerative Biology, Harvard University, Cambridge, MA, USA
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Edinson Lucumi Moreno
2Department of Neurology, Brigham and Women’s Hospital, Boston, MA, USA
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  • ORCID record for Edinson Lucumi Moreno
Jack Blank
4Prime Medicine, Inc. Cambridge, MA, USA
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Kris Holton
3Department of Stem Cell and Regenerative Biology, Harvard University, Cambridge, MA, USA
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Tim Ahfeldt
5Recursion Pharmaceuticals, Salt Lake City, UT, USA
6Nash Family Department of Neuroscience at Mount Sinai, New York, NY, USA
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Melissa Furlong
7University of Arizona, Mel and Enid Zuckerman College of Public Health, Tucson, Arizona, USA
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Yu Yu
8Center for Health Policy Research, UCLA Fielding School of Public Health, Los Angeles, California, USA
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Myles Cockburn
9Department of Population and Public Health Sciences, Keck School of Medicine, University of Southern California, CA, USA
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Laura K Thompson
9Department of Population and Public Health Sciences, Keck School of Medicine, University of Southern California, CA, USA
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Jeff Bronstein
1Department of Neurology, UCLA David Geffen School of Medicine, Los Angeles, California, USA
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Lee L. Rubin
3Department of Stem Cell and Regenerative Biology, Harvard University, Cambridge, MA, USA
11Harvard Stem Cell Institute, Cambridge, MA, USA
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  • For correspondence: lee_rubin@harvard.edu vkhurana@bwh.harvard.edu britz@ucla.edu
Vikram Khurana
2Department of Neurology, Brigham and Women’s Hospital, Boston, MA, USA
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  • For correspondence: lee_rubin@harvard.edu vkhurana@bwh.harvard.edu britz@ucla.edu
Beate Ritz
1Department of Neurology, UCLA David Geffen School of Medicine, Los Angeles, California, USA
10Department of Epidemiology, UCLA Fielding School of Public Health, Los Angeles, California, USA
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  • For correspondence: lee_rubin@harvard.edu vkhurana@bwh.harvard.edu britz@ucla.edu
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ABSTRACT

Parkinson’s disease (PD) is a complex, multi-factorial neurodegenerative disease, known to involve genetic, aging-related components, but also to be highly sensitive to environmental factors. In particular, ample evidence links pesticides to PD etiology. Here, establishing a field-to-bench paradigm, we have combined record-based exposure assessment in a population-based epidemiologic study of PD with testing in dopaminergic neurons produced from iPSCs to further identify and classify PD-relevant pesticides. First, agricultural pesticide-application records in California enabled us to investigate exposure to nearly 300 specific pesticides and PD risk in a comprehensive, pesticide-wide association study (PWAS). We implicated long-term exposure to 53 pesticide active ingredients in PD risk and identified their relevant co-exposure profiles. Second, to identify which of these pesticides might contribute to PD through direct effects on dopaminergic neurons, we employed a live-cell imaging screening paradigm in which neurons, definitively identified with a tyrosine hydroxylase reporter, were exposed to 43 of the high-risk pesticides. Using detailed morphometric measures, we found 10 pesticides were directly toxic to these neurons. Further, we analyzed pesticides typically used in combinations in cotton farming. Among these “cotton cluster” pesticides, co-exposures resulted in markedly greater toxicity than any single pesticide. Trifluralin was a pivotal driver of toxicity to dopaminergic neurons and led to marked mitochondrial dysfunction. Our field-to-bench paradigm may prove useful to mechanistically dissect pesticide exposure implicated in PD risk, and guide agricultural policy in the future.

Competing Interest Statement

L.L.R. is a founder of and a member of the Scientific Advisory Board of Vesalius Therapeutics, a private biotechnology company, and an owner of stock options. He is a member of the Scientific Advisory Board of Yumanity Therapeutics and a shareholder. Both companies study Parkinson's disease. B.R. and R.C.K. have been retained as expert consultants for plaintiffs in a lawsuit against Syngenta Crop Protection LLC on the role of paraquat in Parkinson's disease causation. V.K. is scientific cofounder and senior adviser for Yumanity Therapeutics. He holds equity in the company.

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  • ↵* co-first authors

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Coupling comprehensive pesticide-wide association study to iPSC dopaminergic screening identifies and classifies Parkinson-relevant pesticides
Kimberly C Paul, Richard C Krolewski, Edinson Lucumi Moreno, Jack Blank, Kris Holton, Tim Ahfeldt, Melissa Furlong, Yu Yu, Myles Cockburn, Laura K Thompson, Jeff Bronstein, Lee L. Rubin, Vikram Khurana, Beate Ritz
bioRxiv 2022.02.06.479305; doi: https://doi.org/10.1101/2022.02.06.479305
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Coupling comprehensive pesticide-wide association study to iPSC dopaminergic screening identifies and classifies Parkinson-relevant pesticides
Kimberly C Paul, Richard C Krolewski, Edinson Lucumi Moreno, Jack Blank, Kris Holton, Tim Ahfeldt, Melissa Furlong, Yu Yu, Myles Cockburn, Laura K Thompson, Jeff Bronstein, Lee L. Rubin, Vikram Khurana, Beate Ritz
bioRxiv 2022.02.06.479305; doi: https://doi.org/10.1101/2022.02.06.479305

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