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Functional, transcriptional, and microbial shifts associated with healthy pulmonary aging: insights from rhesus macaques

View ORCID ProfileNicholas S. Rhoades, Michael Davies, Sloan A. Lewis, Isaac R. Cinco, Steven G. Kohama, Luiz E. Bermudez, Kevin L. Winthrop, Cristina Fuss, Julie A. Mattison, Eliot R. Spindel, View ORCID ProfileIlhem Messaoudi
doi: https://doi.org/10.1101/2022.02.08.479578
Nicholas S. Rhoades
1Department of Molecular Biology and Biochemistry, University of California Irvine, Irvine, CA, USA
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  • ORCID record for Nicholas S. Rhoades
Michael Davies
2Divsion of Neuroscience, Oregon National Primate Research Center, Oregon Health & Science University, Beaverton, OR, USA
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Sloan A. Lewis
1Department of Molecular Biology and Biochemistry, University of California Irvine, Irvine, CA, USA
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Isaac R. Cinco
1Department of Molecular Biology and Biochemistry, University of California Irvine, Irvine, CA, USA
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Steven G. Kohama
2Divsion of Neuroscience, Oregon National Primate Research Center, Oregon Health & Science University, Beaverton, OR, USA
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Luiz E. Bermudez
3Department of Microbiology, College of Sciences, Carlson College of Veterinary Medicine, Oregon State University, Corvallis, OR, USA
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Kevin L. Winthrop
4Divisions of Infectious Diseases and Ophthalmology, School of Medicine, Oregon Health & Science University, OHSU-PSU School of Public Health, Portland, OR, USA
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Cristina Fuss
5Department of Diagnostic Radiology, School of Medicine, Oregon Health & Science University, Portland, OR, USA
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Julie A. Mattison
6Translational Gerontology Branch, National Institute on Aging, Dickerson, MD, USA
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Eliot R. Spindel
2Divsion of Neuroscience, Oregon National Primate Research Center, Oregon Health & Science University, Beaverton, OR, USA
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Ilhem Messaoudi
1Department of Molecular Biology and Biochemistry, University of California Irvine, Irvine, CA, USA
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  • ORCID record for Ilhem Messaoudi
  • For correspondence: Ilhem.messaoudi@uky.edu
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ABSTRACT

Older individuals are at increased risk of developing severe respiratory infections due to age-related changes in the immunological, microbial, and functional landscape of the lung. However, our understanding of the impact of age on the respiratory tract remains limited as samples from healthy humans are challenging to obtain and confounding variables such as smoking and environmental pollutant exposure make it difficult to assess the true impact of aging. On the other hand, studies in rodent models are biased by their specific pathogen free status. In this study, we utilize a rhesus macaque model of healthy aging to examine the functional, immunological, and microbial consequences of aging in the lung. Pulmonary function testing in this large (n=34 adult, n=49 aged) cross-sectional study established age and sex differences similar to humans supporting the translational accuracy of this model. Additionally, an increased abundance of myeloid cells (alveolar and infiltrating macrophages) and a concomitant decrease in T-cells were also observed in aged animals. Single cell RNA sequencing indicated a transcriptional shift in the pulmonary CD8+ T-cell population from GRZMB expressing cells to IFN expressing cells, while frequency of IL-1B expressing alveolar macrophages was significantly reduced. Interestingly, the lung microbiome of many animals was dominated by a single microbe, Tropheryma spp., the prevalence of which decreased with age. These data provide a comprehensive picture of the functional, microbial and immunological changes of the lung in healthy macaque aging and provide insight into the increased prevalence and severity of respiratory disease in the elderly.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • Supported by P51-OD011092, R01AI152258-02, T32AI007319-32

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted February 10, 2022.
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Functional, transcriptional, and microbial shifts associated with healthy pulmonary aging: insights from rhesus macaques
Nicholas S. Rhoades, Michael Davies, Sloan A. Lewis, Isaac R. Cinco, Steven G. Kohama, Luiz E. Bermudez, Kevin L. Winthrop, Cristina Fuss, Julie A. Mattison, Eliot R. Spindel, Ilhem Messaoudi
bioRxiv 2022.02.08.479578; doi: https://doi.org/10.1101/2022.02.08.479578
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Functional, transcriptional, and microbial shifts associated with healthy pulmonary aging: insights from rhesus macaques
Nicholas S. Rhoades, Michael Davies, Sloan A. Lewis, Isaac R. Cinco, Steven G. Kohama, Luiz E. Bermudez, Kevin L. Winthrop, Cristina Fuss, Julie A. Mattison, Eliot R. Spindel, Ilhem Messaoudi
bioRxiv 2022.02.08.479578; doi: https://doi.org/10.1101/2022.02.08.479578

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