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Global determinants of insect genetic diversity

View ORCID ProfileConnor M French, View ORCID ProfileLaura D Bertola, View ORCID ProfileAna C Carnaval, View ORCID ProfileEvan P Economo, View ORCID ProfileJamie M Kass, View ORCID ProfileDavid J Lohman, View ORCID ProfileKatharine A Marske, View ORCID ProfileRudolf Meier, View ORCID ProfileIsaac Overcast, View ORCID ProfileAndrew J. Rominger, View ORCID ProfilePhillip Staniczenko, View ORCID ProfileMichael J Hickerson
doi: https://doi.org/10.1101/2022.02.09.479762
Connor M French
1Department of Biology, City College of New York, New York, New York, USA
2Biology Ph.D. Program, The Graduate Center, City University of New York, New York, New York, USA
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  • For correspondence: cfrench@gradcenter.cuny.edu
Laura D Bertola
1Department of Biology, City College of New York, New York, New York, USA
3Section for Computational and RNA Biology, Department of Biology, University of Copenhagen, Copenhagen N 2200, Denmark
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Ana C Carnaval
1Department of Biology, City College of New York, New York, New York, USA
2Biology Ph.D. Program, The Graduate Center, City University of New York, New York, New York, USA
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Evan P Economo
4Biodiversity and Biocomplexity Unit, Okinawa Institute of Science and Technology, Onna, Okinawa, Japan, 904-0495
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Jamie M Kass
4Biodiversity and Biocomplexity Unit, Okinawa Institute of Science and Technology, Onna, Okinawa, Japan, 904-0495
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David J Lohman
1Department of Biology, City College of New York, New York, New York, USA
2Biology Ph.D. Program, The Graduate Center, City University of New York, New York, New York, USA
5Entomology Section, National Museum of Natural History, Manila, Philippines
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Katharine A Marske
6Department of Biology, University of Oklahoma, Norman, Oklahoma, USA
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Rudolf Meier
7Humboldt University, Berlin, Germany
8Museum für Naturkunde, Berlin, Germany
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Isaac Overcast
2Biology Ph.D. Program, The Graduate Center, City University of New York, New York, New York, USA
9Institut de Biologie de l’Ecole Normale Superieure, Paris, France
10Department of Vertebrate Zoology, American Museum of Natural History, New York, New York, USA
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Andrew J. Rominger
11School of Biology and Ecology, University of Maine, Orono, ME, USA
12Maine Center for Genetics in the Environment, University of Maine, Orono, ME, USA
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Phillip Staniczenko
13Department of Biology, Brooklyn College, Brooklyn, New York, USA
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Michael J Hickerson
1Department of Biology, City College of New York, New York, New York, USA
2Biology Ph.D. Program, The Graduate Center, City University of New York, New York, New York, USA
14Division of Invertebrate Zoology, American Museum of Natural History, New York, New York, USA
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Abstract

Understanding global patterns of genetic diversity (GD) is essential for describing, monitoring, and preserving life on Earth. To date, efforts to map macrogenetic patterns have been restricted to vertebrates that comprise only a small fraction of Earth’s biodiversity. Here, we construct the first global map of predicted insect GD, derived from open data. We calculate the GD mean (GDM) and evenness (GDE) of insect assemblages across the globe, identify environmental correlates of insect GD, and make predictions. Based on the largest single-locus genetic dataset assembled yet, we find that GDE follows a quadratic latitudinal gradient peaking in the subtropics. Both GDM and GDE correlate with seasonally hot temperatures, as well as climate stability since the LGM. Our models explain 27.9% and 24.0% of the observed variation in GDM and GDE in insects, respectively, making an important step towards understanding global biodiversity patterns in the most diverse animal taxon.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • In summary, we have: -- Clarified the description of the modeling workflow to make it easier to reproduce. -- Added sensitivity analyses for five additional minimum OTU thresholds (>10, >25, >50, >100, >150, >200), which demonstrate qualitatively similar results. -- Added simulation experiments which show that any potential bias due to missing duplicate alleles is negligible across the relevant parameter space of our models. -- Simplified our modeling approach by removing an extra step of model selection, which extends our initial results based on contemporary climate variables to show that the genetic diversity of insect assemblages has also been significantly influenced by historical climate change. -- Revised our previous discussion to place findings in the context of the eco-evolutionary processes underlying Rapoport's rule, varying range sizes, and late Pleistocene population histories. -- Added a discussion on the advantages and limitations of using mtDNA for global macrogenetics studies.

  • https://github.com/connor-french/global-insect-macrogenetics

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted November 29, 2022.
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Global determinants of insect genetic diversity
Connor M French, Laura D Bertola, Ana C Carnaval, Evan P Economo, Jamie M Kass, David J Lohman, Katharine A Marske, Rudolf Meier, Isaac Overcast, Andrew J. Rominger, Phillip Staniczenko, Michael J Hickerson
bioRxiv 2022.02.09.479762; doi: https://doi.org/10.1101/2022.02.09.479762
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Global determinants of insect genetic diversity
Connor M French, Laura D Bertola, Ana C Carnaval, Evan P Economo, Jamie M Kass, David J Lohman, Katharine A Marske, Rudolf Meier, Isaac Overcast, Andrew J. Rominger, Phillip Staniczenko, Michael J Hickerson
bioRxiv 2022.02.09.479762; doi: https://doi.org/10.1101/2022.02.09.479762

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