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Acoel single-cell atlas reveals expression dynamics and heterogeneity of a pluripotent stem cell population

View ORCID ProfileRyan E. Hulett, Julian O. Kimura, D. Marcela Bolaños, Yi-Jyun Luo, Lorenzo Ricci, View ORCID ProfileMansi Srivastava
doi: https://doi.org/10.1101/2022.02.10.479464
Ryan E. Hulett
Department of Organismic and Evolutionary Biology, Museum of Comparative Zoology, Harvard University, Cambridge, MA 02138
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Julian O. Kimura
Department of Organismic and Evolutionary Biology, Museum of Comparative Zoology, Harvard University, Cambridge, MA 02138
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D. Marcela Bolaños
Department of Organismic and Evolutionary Biology, Museum of Comparative Zoology, Harvard University, Cambridge, MA 02138
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Yi-Jyun Luo
Department of Organismic and Evolutionary Biology, Museum of Comparative Zoology, Harvard University, Cambridge, MA 02138
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Lorenzo Ricci
Department of Organismic and Evolutionary Biology, Museum of Comparative Zoology, Harvard University, Cambridge, MA 02138
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Mansi Srivastava
Department of Organismic and Evolutionary Biology, Museum of Comparative Zoology, Harvard University, Cambridge, MA 02138
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Abstract

Pluripotent adult stem cell populations underlie whole-body regeneration in many distantly related animal lineages. These collectively pluripotent populations of cells share some features across species, such as the expression of piwi and other germline-related genes. Studies of how these cells operate during regeneration are needed in diverse systems to determine how underlying cellular and molecular mechanisms of renewal and differentiation compare. Here, we sought to characterize stem cells and their dynamics in the acoel Hofstenia miamia, a highly regenerative marine worm with a piwi-expressing stem cell population called neoblasts. Transcriptome profiling at single cell resolution revealed cell types shared across postembryonic stages, including stem cells and differentiated cell types such as neural, epidermal, muscle, and digestive cells. Reconstruction of single-cell differentiation trajectories followed by functional studies confirmed that neoblasts are the source of differentiated cells and identified transcription factors needed for the formation of major cell types. Next, analysis of single-cell transcriptomes from regenerating worms showed that both differentiated cells and stem cells dynamically alter gene expression in response to amputation. Further analysis of the stem cells recovered subpopulations of neoblasts, each with specific transcriptional profiles suggesting that the majority of neoblasts are specialized to differentiated lineages, reflecting putatively lineage-primed progenitors. Notably, neoblast subsets in Hofstenia were identifiable consistently across postembryonic stages and also displayed differential expression dynamics in response to wounding. Altogether, these data suggest that whole-body regeneration is accomplished by the coordination of cells with distinct and dynamic transcriptomic profiles through time. Furthermore, the data generated here will enable the study of how this coordination is achieved, enhancing our understanding of pluripotent stem cells and their evolution across metazoans.

Competing Interest Statement

The authors have declared no competing interest.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission.
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Posted February 10, 2022.
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Acoel single-cell atlas reveals expression dynamics and heterogeneity of a pluripotent stem cell population
Ryan E. Hulett, Julian O. Kimura, D. Marcela Bolaños, Yi-Jyun Luo, Lorenzo Ricci, Mansi Srivastava
bioRxiv 2022.02.10.479464; doi: https://doi.org/10.1101/2022.02.10.479464
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Acoel single-cell atlas reveals expression dynamics and heterogeneity of a pluripotent stem cell population
Ryan E. Hulett, Julian O. Kimura, D. Marcela Bolaños, Yi-Jyun Luo, Lorenzo Ricci, Mansi Srivastava
bioRxiv 2022.02.10.479464; doi: https://doi.org/10.1101/2022.02.10.479464

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