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Glutamate indicators with improved activation kinetics and localization for imaging synaptic transmission

View ORCID ProfileAbhi Aggarwal, View ORCID ProfileRui Liu, Yang Chen, Amelia J Ralowicz, Samuel J Bergerson, Filip Tomaska, View ORCID ProfileTimothy L Hanson, View ORCID ProfileJeremy P Hasseman, Daniel Reep, Getahun Tsegaye, Pantong Yao, Xiang Ji, Marinus Kloos, Deepika Walpita, Ronak Patel, View ORCID ProfileManuel A Mohr, View ORCID ProfilePaul W Tilberg, View ORCID ProfileBoaz Mohar, The GENIE Project Team, View ORCID ProfileLoren L Looger, View ORCID ProfileJonathan S Marvin, View ORCID ProfileMichael B Hoppa, Arthur Konnerth, View ORCID ProfileDavid Kleinfeld, View ORCID ProfileEric R Schreiter, View ORCID ProfileKaspar Podgorski
doi: https://doi.org/10.1101/2022.02.13.480251
Abhi Aggarwal
1Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, Virginia, USA 20147
2Allen Institute for Neural Dynamics, Seattle, Washington, USA 98109
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  • ORCID record for Abhi Aggarwal
Rui Liu
3Department of Physics, University of California, San Diego, La Jolla, California, USA 92093
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Yang Chen
4Institute of Neuroscience and Cluster for Systems Neurology (SyNergy), Technical University of Munich, 80802 Munich, Germany
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Amelia J Ralowicz
5Department of Biological Sciences, Dartmouth College, Hanover, New Hampshire, USA 03755
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Samuel J Bergerson
5Department of Biological Sciences, Dartmouth College, Hanover, New Hampshire, USA 03755
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Filip Tomaska
1Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, Virginia, USA 20147
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Timothy L Hanson
1Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, Virginia, USA 20147
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Jeremy P Hasseman
1Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, Virginia, USA 20147
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Daniel Reep
1Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, Virginia, USA 20147
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Getahun Tsegaye
1Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, Virginia, USA 20147
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Pantong Yao
7Department of Neurosciences, University of California, San Diego, La Jolla, California, USA 92093
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Xiang Ji
3Department of Physics, University of California, San Diego, La Jolla, California, USA 92093
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Marinus Kloos
4Institute of Neuroscience and Cluster for Systems Neurology (SyNergy), Technical University of Munich, 80802 Munich, Germany
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Deepika Walpita
1Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, Virginia, USA 20147
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Ronak Patel
1Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, Virginia, USA 20147
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Manuel A Mohr
1Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, Virginia, USA 20147
8Department of Biosystems Science and Engineering, Eidgenössische Technische Hochschule (ETH) Zurich, 4058 Basel, Switzerland
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Paul W Tilberg
1Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, Virginia, USA 20147
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Boaz Mohar
1Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, Virginia, USA 20147
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1Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, Virginia, USA 20147
Loren L Looger
1Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, Virginia, USA 20147
7Department of Neurosciences, University of California, San Diego, La Jolla, California, USA 92093
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Jonathan S Marvin
1Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, Virginia, USA 20147
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Michael B Hoppa
5Department of Biological Sciences, Dartmouth College, Hanover, New Hampshire, USA 03755
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Arthur Konnerth
4Institute of Neuroscience and Cluster for Systems Neurology (SyNergy), Technical University of Munich, 80802 Munich, Germany
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David Kleinfeld
3Department of Physics, University of California, San Diego, La Jolla, California, USA 92093
9Section of Neurobiology, University of California, San Diego, La Jolla, California, USA 93093
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Eric R Schreiter
1Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, Virginia, USA 20147
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Kaspar Podgorski
1Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, Virginia, USA 20147
2Allen Institute for Neural Dynamics, Seattle, Washington, USA 98109
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  • For correspondence: kaspar.podgorski@alleninstitute.org
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Abstract

The fluorescent glutamate indicator iGluSnFR enables imaging of neurotransmission with genetic and molecular specificity. However, existing iGluSnFR variants exhibit saturating activation kinetics and are excluded from post-synaptic densities, limiting their ability to distinguish synaptic from extrasynaptic glutamate. Using a multi-assay screen in bacteria, soluble protein, and cultured neurons, we generated novel variants with improved kinetics and signal-to-noise ratios. We also developed surface display constructs that improve iGluSnFR’s nanoscopic localization to post-synapses. The resulting indicator, iGluSnFR3, exhibits rapid non-saturating activation kinetics and reports synaptic glutamate release with improved linearity and increased specificity versus extrasynaptic signals in cultured neurons. In mouse visual cortex, imaging of iGluSnFR3 at individual boutons reported single electrophysiologically-observed action potentials with high specificity versus non-synaptic transients. In vibrissal sensory cortex Layer 4, we used iGluSnFR3 to characterize distinct patterns of touch-evoked feedforward input from thalamocortical boutons and both feedforward and recurrent input onto L4 cortical neuron dendritic spines.

Competing Interest Statement

The authors have declared no competing interest.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted March 04, 2022.
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Glutamate indicators with improved activation kinetics and localization for imaging synaptic transmission
Abhi Aggarwal, Rui Liu, Yang Chen, Amelia J Ralowicz, Samuel J Bergerson, Filip Tomaska, Timothy L Hanson, Jeremy P Hasseman, Daniel Reep, Getahun Tsegaye, Pantong Yao, Xiang Ji, Marinus Kloos, Deepika Walpita, Ronak Patel, Manuel A Mohr, Paul W Tilberg, Boaz Mohar, The GENIE Project Team, Loren L Looger, Jonathan S Marvin, Michael B Hoppa, Arthur Konnerth, David Kleinfeld, Eric R Schreiter, Kaspar Podgorski
bioRxiv 2022.02.13.480251; doi: https://doi.org/10.1101/2022.02.13.480251
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Glutamate indicators with improved activation kinetics and localization for imaging synaptic transmission
Abhi Aggarwal, Rui Liu, Yang Chen, Amelia J Ralowicz, Samuel J Bergerson, Filip Tomaska, Timothy L Hanson, Jeremy P Hasseman, Daniel Reep, Getahun Tsegaye, Pantong Yao, Xiang Ji, Marinus Kloos, Deepika Walpita, Ronak Patel, Manuel A Mohr, Paul W Tilberg, Boaz Mohar, The GENIE Project Team, Loren L Looger, Jonathan S Marvin, Michael B Hoppa, Arthur Konnerth, David Kleinfeld, Eric R Schreiter, Kaspar Podgorski
bioRxiv 2022.02.13.480251; doi: https://doi.org/10.1101/2022.02.13.480251

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