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Architecture and self-assembly of the jumbo bacteriophage nuclear shell

View ORCID ProfileThomas G. Laughlin, View ORCID ProfileAmar Deep, View ORCID ProfileAmy M. Prichard, View ORCID ProfileChristian Seitz, View ORCID ProfileYajie Gu, View ORCID ProfileEray Enustun, View ORCID ProfileSergey Suslov, View ORCID ProfileKanika Khanna, View ORCID ProfileErica A. Birkholz, View ORCID ProfileEmily Armbruster, View ORCID ProfileJ. Andrew McCammon, View ORCID ProfileRommie E. Amaro, View ORCID ProfileJoe Pogliano, View ORCID ProfileKevin D. Corbett, View ORCID ProfileElizabeth Villa
doi: https://doi.org/10.1101/2022.02.14.480162
Thomas G. Laughlin
aDivision of Biological Sciences, University of California San Diego, La Jolla, CA, USA
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  • ORCID record for Thomas G. Laughlin
Amar Deep
bDepartment of Cellular and Molecular Medicine, University of California San Diego, La Jolla, California, USA
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Amy M. Prichard
aDivision of Biological Sciences, University of California San Diego, La Jolla, CA, USA
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  • ORCID record for Amy M. Prichard
Christian Seitz
cDepartment of Chemistry and Biochemistry, University of California San Diego, La Jolla, California, USA
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Yajie Gu
bDepartment of Cellular and Molecular Medicine, University of California San Diego, La Jolla, California, USA
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  • ORCID record for Yajie Gu
Eray Enustun
aDivision of Biological Sciences, University of California San Diego, La Jolla, CA, USA
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Sergey Suslov
aDivision of Biological Sciences, University of California San Diego, La Jolla, CA, USA
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  • ORCID record for Sergey Suslov
Kanika Khanna
aDivision of Biological Sciences, University of California San Diego, La Jolla, CA, USA
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  • ORCID record for Kanika Khanna
Erica A. Birkholz
aDivision of Biological Sciences, University of California San Diego, La Jolla, CA, USA
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  • ORCID record for Erica A. Birkholz
Emily Armbruster
aDivision of Biological Sciences, University of California San Diego, La Jolla, CA, USA
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  • ORCID record for Emily Armbruster
J. Andrew McCammon
cDepartment of Chemistry and Biochemistry, University of California San Diego, La Jolla, California, USA
dDepartment of Pharmacology, University of California San Diego, La Jolla, California, USA
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Rommie E. Amaro
cDepartment of Chemistry and Biochemistry, University of California San Diego, La Jolla, California, USA
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  • ORCID record for Rommie E. Amaro
Joe Pogliano
aDivision of Biological Sciences, University of California San Diego, La Jolla, CA, USA
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  • For correspondence: evilla@ucsd.edu kcorbett@ucsd.edu jpogliano@ucsd.edu
Kevin D. Corbett
bDepartment of Cellular and Molecular Medicine, University of California San Diego, La Jolla, California, USA
cDepartment of Chemistry and Biochemistry, University of California San Diego, La Jolla, California, USA
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  • For correspondence: evilla@ucsd.edu kcorbett@ucsd.edu jpogliano@ucsd.edu
Elizabeth Villa
aDivision of Biological Sciences, University of California San Diego, La Jolla, CA, USA
eHoward Hughes Medical Institute, University of California San Diego, La Jolla, California, USA
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  • ORCID record for Elizabeth Villa
  • For correspondence: evilla@ucsd.edu kcorbett@ucsd.edu jpogliano@ucsd.edu
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Abstract

Bacteria encode myriad defenses that target the genomes of infecting bacteriophage, including restriction-modification and CRISPR/Cas systems. In response, one family of large bacteriophage employs a nucleus-like compartment to protect their replicating genomes by excluding host defense factors. However, the principle composition and structure of this compartment remain unknown. Here, we find that the bacteriophage nuclear shell assembles primarily from one protein, termed chimallin. Combining cryo-electron tomography of nuclear shells in bacteriophage-infected cells and cryo-electron microscopy of a minimal chimallin compartment in vitro, we show that chimallin cooperatively self-assembles as a flexible sheet into closed micron-scale compartments. The architecture and assembly dynamics of the chimallin shell suggest mechanisms for its nucleation and growth, and its role as a scaffold for phage-encoded factors mediating macromolecular transport, cytoskeletal interactions, and viral maturation.

Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted February 14, 2022.
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Architecture and self-assembly of the jumbo bacteriophage nuclear shell
Thomas G. Laughlin, Amar Deep, Amy M. Prichard, Christian Seitz, Yajie Gu, Eray Enustun, Sergey Suslov, Kanika Khanna, Erica A. Birkholz, Emily Armbruster, J. Andrew McCammon, Rommie E. Amaro, Joe Pogliano, Kevin D. Corbett, Elizabeth Villa
bioRxiv 2022.02.14.480162; doi: https://doi.org/10.1101/2022.02.14.480162
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Architecture and self-assembly of the jumbo bacteriophage nuclear shell
Thomas G. Laughlin, Amar Deep, Amy M. Prichard, Christian Seitz, Yajie Gu, Eray Enustun, Sergey Suslov, Kanika Khanna, Erica A. Birkholz, Emily Armbruster, J. Andrew McCammon, Rommie E. Amaro, Joe Pogliano, Kevin D. Corbett, Elizabeth Villa
bioRxiv 2022.02.14.480162; doi: https://doi.org/10.1101/2022.02.14.480162

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