Skip to main content
bioRxiv
  • Home
  • About
  • Submit
  • ALERTS / RSS
Advanced Search
New Results

Spinning Disk Multifocal Microscopy for Dynamic Arbitrarily Shaped Surface Imaging at Centimetre Scale and Micrometre Resolution

View ORCID ProfileHao Xie, Xiaofei Han, Guihua Xiao, Hanyun Xu, Yuanlong Zhang, Guoxun Zhang, Qingwei Li, Jin He, Dan Zhu, Xinguang Yu, Qionghai Dai
doi: https://doi.org/10.1101/2022.02.22.481397
Hao Xie
1Department of Automation, Tsinghua University, Beijing 100084, China
2Institute for Brain and Cognitive Sciences, Tsinghua University, Beijing 100084, China
3Beijing Key Laboratory of Multi-dimension & Multi-scale Computational Photography (MMCP), Tsinghua University, Beijing 100084, China
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Hao Xie
  • For correspondence: xiehao@tsinghua.edu.cn daiqh@tsinghua.edu.cn
Xiaofei Han
1Department of Automation, Tsinghua University, Beijing 100084, China
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Guihua Xiao
1Department of Automation, Tsinghua University, Beijing 100084, China
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Hanyun Xu
4Department of Neurosurgery, The First Medical Center of PLA General Hospital, Beijing 100853, China
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Yuanlong Zhang
1Department of Automation, Tsinghua University, Beijing 100084, China
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Guoxun Zhang
1Department of Automation, Tsinghua University, Beijing 100084, China
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Qingwei Li
5School of Medicine, Tsinghua University, Beijing 100084, China
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Jin He
1Department of Automation, Tsinghua University, Beijing 100084, China
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Dan Zhu
6Britton Chance Center for Biomedical Photonics, Wuhan National Laboratory for Optoelectronics, Huazhong University of Science and Technology; MoE Key Laboratory for Biomedical Photonics, Huazhong University of Science and Technology, Wuhan, Hubei 430074, China
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Xinguang Yu
4Department of Neurosurgery, The First Medical Center of PLA General Hospital, Beijing 100853, China
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Qionghai Dai
1Department of Automation, Tsinghua University, Beijing 100084, China
2Institute for Brain and Cognitive Sciences, Tsinghua University, Beijing 100084, China
3Beijing Key Laboratory of Multi-dimension & Multi-scale Computational Photography (MMCP), Tsinghua University, Beijing 100084, China
5School of Medicine, Tsinghua University, Beijing 100084, China
7IDG/McGovern Institute for Brain Research, Tsinghua University, Beijing 100084, China
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • For correspondence: xiehao@tsinghua.edu.cn daiqh@tsinghua.edu.cn
  • Abstract
  • Full Text
  • Info/History
  • Metrics
  • Supplementary material
  • Preview PDF
Loading

ABSTRACT

The large-scale fluorescence microscopy has enabled the observation of dynamic physiological activities at the single cellular level across the mouse cortex, such as distributed neuronal population representations. However, video-rate high-resolution microscopy at sophisticated biological surfaces in nature keeps a challenging task for the tradeoff between the speed, resolution, and field of view. Here we propose Spinning Disk Multifocal Microscopy (SDiM) for arbitrarily shaped surfaces, which enables imaging at centimeter field-of-view, micrometer resolution and up to 30 frames per second across the depth range of 450 µm. We apply this technique in various microscopic systems, including customized macroscopic systems and the Real-time Ultra-large-Scale imaging at High resolution macroscopy (RUSH), in both the reflective mode and the fluorescence mode, and in the study of cortex-wide single-neuron imaging and immune cell tracking. SDiM provides an opportunity for studying the cortex-wide multi-scale cellular interactions in biological tissues.

Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission.
Back to top
PreviousNext
Posted March 01, 2022.
Download PDF

Supplementary Material

Email

Thank you for your interest in spreading the word about bioRxiv.

NOTE: Your email address is requested solely to identify you as the sender of this article.

Enter multiple addresses on separate lines or separate them with commas.
Spinning Disk Multifocal Microscopy for Dynamic Arbitrarily Shaped Surface Imaging at Centimetre Scale and Micrometre Resolution
(Your Name) has forwarded a page to you from bioRxiv
(Your Name) thought you would like to see this page from the bioRxiv website.
CAPTCHA
This question is for testing whether or not you are a human visitor and to prevent automated spam submissions.
Share
Spinning Disk Multifocal Microscopy for Dynamic Arbitrarily Shaped Surface Imaging at Centimetre Scale and Micrometre Resolution
Hao Xie, Xiaofei Han, Guihua Xiao, Hanyun Xu, Yuanlong Zhang, Guoxun Zhang, Qingwei Li, Jin He, Dan Zhu, Xinguang Yu, Qionghai Dai
bioRxiv 2022.02.22.481397; doi: https://doi.org/10.1101/2022.02.22.481397
Digg logo Reddit logo Twitter logo Facebook logo Google logo LinkedIn logo Mendeley logo
Citation Tools
Spinning Disk Multifocal Microscopy for Dynamic Arbitrarily Shaped Surface Imaging at Centimetre Scale and Micrometre Resolution
Hao Xie, Xiaofei Han, Guihua Xiao, Hanyun Xu, Yuanlong Zhang, Guoxun Zhang, Qingwei Li, Jin He, Dan Zhu, Xinguang Yu, Qionghai Dai
bioRxiv 2022.02.22.481397; doi: https://doi.org/10.1101/2022.02.22.481397

Citation Manager Formats

  • BibTeX
  • Bookends
  • EasyBib
  • EndNote (tagged)
  • EndNote 8 (xml)
  • Medlars
  • Mendeley
  • Papers
  • RefWorks Tagged
  • Ref Manager
  • RIS
  • Zotero
  • Tweet Widget
  • Facebook Like
  • Google Plus One

Subject Area

  • Bioengineering
Subject Areas
All Articles
  • Animal Behavior and Cognition (4120)
  • Biochemistry (8829)
  • Bioengineering (6533)
  • Bioinformatics (23488)
  • Biophysics (11812)
  • Cancer Biology (9228)
  • Cell Biology (13347)
  • Clinical Trials (138)
  • Developmental Biology (7450)
  • Ecology (11428)
  • Epidemiology (2066)
  • Evolutionary Biology (15175)
  • Genetics (10455)
  • Genomics (14057)
  • Immunology (9188)
  • Microbiology (22206)
  • Molecular Biology (8825)
  • Neuroscience (47654)
  • Paleontology (351)
  • Pathology (1431)
  • Pharmacology and Toxicology (2493)
  • Physiology (3739)
  • Plant Biology (8095)
  • Scientific Communication and Education (1438)
  • Synthetic Biology (2225)
  • Systems Biology (6044)
  • Zoology (1257)