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Bacterial metatranscriptomes in wastewater can differentiate virally infected human populations
View ORCID ProfileRodolfo A Salido, Cameron Martino, View ORCID ProfileSmruthi Karthikeyan, Shi Huang, Gibraan Rahman, Antonio Gonzalez, Livia S. Zaramela, View ORCID ProfileKristen L Beck, Shrikant Bhute, Kalen Cantrell, Anna Paola Carrieri, Sawyer Farmer, View ORCID ProfileNiina Haiminen, Greg Humphrey, Ho-Cheol Kim, View ORCID ProfileLaxmi Parida, Alex Richter, Yoshiki Vázquez-Baeza, Karsten Zengler, Austin D. Swafford, Andrew Bartko, Rob Knight
doi: https://doi.org/10.1101/2022.02.23.481658
Rodolfo A Salido
1Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA
2Department of Bioengineering, University of California San Diego, La Jolla, CA, USA
4Center for Microbiome Innovation, Jacobs School of Engineering, University of California San Diego, La Jolla, CA, USA
Cameron Martino
1Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA
3Bioinformatics and Systems Biology Program, Jacobs School of Engineering, University of California San Diego, La Jolla, CA, USA
4Center for Microbiome Innovation, Jacobs School of Engineering, University of California San Diego, La Jolla, CA, USA
Smruthi Karthikeyan
1Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA
Shi Huang
1Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA
4Center for Microbiome Innovation, Jacobs School of Engineering, University of California San Diego, La Jolla, CA, USA
Gibraan Rahman
1Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA
5Department of Computer Science and Engineering, Jacobs School of Engineering, University of California San Diego, La Jolla, CA, USA
Antonio Gonzalez
1Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA
Livia S. Zaramela
1Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA
Kristen L Beck
6AI and Cognitive Software, IBM Research-Almaden, San Jose, CA, USA
Shrikant Bhute
4Center for Microbiome Innovation, Jacobs School of Engineering, University of California San Diego, La Jolla, CA, USA
Kalen Cantrell
4Center for Microbiome Innovation, Jacobs School of Engineering, University of California San Diego, La Jolla, CA, USA
5Department of Computer Science and Engineering, Jacobs School of Engineering, University of California San Diego, La Jolla, CA, USA
Anna Paola Carrieri
7IBM Research Europe - Daresbury, UK
Sawyer Farmer
1Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA
Niina Haiminen
8IBM T.J Watson Research Center, Yorktown Heights, New York, USA
Greg Humphrey
1Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA
Ho-Cheol Kim
6AI and Cognitive Software, IBM Research-Almaden, San Jose, CA, USA
Laxmi Parida
8IBM T.J Watson Research Center, Yorktown Heights, New York, USA
Alex Richter
4Center for Microbiome Innovation, Jacobs School of Engineering, University of California San Diego, La Jolla, CA, USA
Yoshiki Vázquez-Baeza
4Center for Microbiome Innovation, Jacobs School of Engineering, University of California San Diego, La Jolla, CA, USA
Karsten Zengler
1Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA
2Department of Bioengineering, University of California San Diego, La Jolla, CA, USA
Austin D. Swafford
4Center for Microbiome Innovation, Jacobs School of Engineering, University of California San Diego, La Jolla, CA, USA
Andrew Bartko
4Center for Microbiome Innovation, Jacobs School of Engineering, University of California San Diego, La Jolla, CA, USA
Rob Knight
1Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA
2Department of Bioengineering, University of California San Diego, La Jolla, CA, USA
4Center for Microbiome Innovation, Jacobs School of Engineering, University of California San Diego, La Jolla, CA, USA
5Department of Computer Science and Engineering, Jacobs School of Engineering, University of California San Diego, La Jolla, CA, USA
Posted February 24, 2022.
Bacterial metatranscriptomes in wastewater can differentiate virally infected human populations
Rodolfo A Salido, Cameron Martino, Smruthi Karthikeyan, Shi Huang, Gibraan Rahman, Antonio Gonzalez, Livia S. Zaramela, Kristen L Beck, Shrikant Bhute, Kalen Cantrell, Anna Paola Carrieri, Sawyer Farmer, Niina Haiminen, Greg Humphrey, Ho-Cheol Kim, Laxmi Parida, Alex Richter, Yoshiki Vázquez-Baeza, Karsten Zengler, Austin D. Swafford, Andrew Bartko, Rob Knight
bioRxiv 2022.02.23.481658; doi: https://doi.org/10.1101/2022.02.23.481658
Bacterial metatranscriptomes in wastewater can differentiate virally infected human populations
Rodolfo A Salido, Cameron Martino, Smruthi Karthikeyan, Shi Huang, Gibraan Rahman, Antonio Gonzalez, Livia S. Zaramela, Kristen L Beck, Shrikant Bhute, Kalen Cantrell, Anna Paola Carrieri, Sawyer Farmer, Niina Haiminen, Greg Humphrey, Ho-Cheol Kim, Laxmi Parida, Alex Richter, Yoshiki Vázquez-Baeza, Karsten Zengler, Austin D. Swafford, Andrew Bartko, Rob Knight
bioRxiv 2022.02.23.481658; doi: https://doi.org/10.1101/2022.02.23.481658
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