Article Information
- March 9, 2022.
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- Version 1 (February 26, 2022 - 18:48).
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Author Information
- James T. Morton1,2,*,
- Dong-Min Jin3,
- Robert H. Mills4,
- Yan Shao5,
- Gibraan Rahman6,7,
- Daniel McDonald7,
- Kirsten Berding8,
- Brittany D. Needham9,
- María Fernanda Zurita10,
- Maude David11,
- Olga V. Averina12,
- Alexey S. Kovtun12,13,
- Antonio Noto14,
- Michele Mussap15,
- Mingbang Wang16,
- Daniel N. Frank17,
- Ellen Li18,
- Wenhao Zhou16,
- Vassilios Fanos19,
- Valery N. Danilenko12,
- Dennis P. Wall20,
- Paúl Cárdenas21,
- Manuel E. Baldeón22,
- Ramnik J. Xavier23,24,25,
- Sarkis K. Mazmanian9,
- Rob Knight7,26,27,
- Jack A. Gilbert7,28,
- Sharon M. Donovan8,
- Trevor D. Lawley5,
- Bob Carpenter1,
- Richard Bonneau1,3,29 and
- Gaspar Taroncher-Oldenburg2,*
- 1Center for Computational Biology, Flatiron Institute, Simons Foundation, New York, NY, USA
- 2The Simons Foundation Autism Research Initiative, Simons Foundation, New York, NY, USA
- 3Center for Genomics and Systems Biology, Department of Biology, New York University, New York, NY, USA
- 4Precidiag Inc, Watertown, MA, USA
- 5Host-Microbiota Interactions Laboratory, Wellcome Sanger Institute, Hinxton, UK
- 6Bioinformatics and Systems Biology Program, University of California San Diego, San Diego, CA, USA
- 7Department of Pediatrics, School of Medicine, University of California San Diego, San Diego, CA, USA
- 8Division of Nutritional Sciences, University of Illinois, Urbana, IL, USA
- 9Division of Biology & Biological Engineering, California Institute of Technology, Pasadena, CA, USA
- 10Microbiology Institute and Health Science College, Universidad San Francisco de Quito, Quito, Ecuador
- 11Departments of Microbiology & Pharmaceutical Sciences, Oregon State University, Corvallis, OR, USA
- 12Vavilov Institute of General Genetics Russian Academy of Sciences, Moscow, Russia
- 13Skolkovo Institute of Science and Technology, Skolkovo, Russia
- 14Department of Biomedical Sciences, School of Medicine, University of Cagliari, Cagliari, Italy
- 15Laboratory Medicine, Department of Surgical Sciences, School of Medicine, University of Cagliari, Italy
- 16Children’s Hospital of Fudan University, National Center for Children’s Health, Shanghai, China
- 17Department of Medicine, University of Colorado Anschutz Medical Campus, Aurora, CO, USA
- 18Department of Medicine, Division of Gastroenterology and Hepatology, Stony Brook University, Stony Brook, NY, USA
- 19Neonatal Intensive Care Unit and Neonatal Pathology, Department of Surgical Sciences, School of Medicine, University of Cagliari, Italy
- 20Pediatrics (Systems Medicine), Biomedical Data Science, and Psychiatry and Behavioral Sciences, Stanford University, Stanford, CA, USA
- 21Institute of Microbiology, COCIBA, Universidad San Francisco de Quito, Quito, Ecuador
- 22Facultad de Ciencias Médicas, de la Salud y la Vida, Universidad Internacional del Ecuador, Quito, Ecuador
- 23Broad Institute of MIT and Harvard, Cambridge, MA, USA
- 24Department of Molecular Biology, Massachusetts General Hospital, Boston, MA, USA
- 25Center for the Study of Inflammatory Bowel Disease, Massachusetts General Hospital, Boston, MA, USA
- 26Department of Computer Science and Engineering, University of California, San Diego, La Jolla, California, USA
- 27Department of Bioengineering, University of California San Diego, La Jolla, California, USA
- 28Scripps Institution of Oceanography, UC San Diego, La Jolla, CA, USA
- 29Prescient Design, a Genentech Accelerator, New York, NY, USA
- ↵*Corresponding authors : Correspondence to James T. Morton or Gaspar Taroncher-Oldenburg; email: gtaroncher-consultant{at}simonsfoundation.org
Author Information : These authors contributed equally : James T. Morton, Gaspar Taroncher-Oldenburg
Contributions J.T.M. and G.T.-O. conceived and designed the study, developed the software, analyzed the data, interpreted the results and wrote the manuscript; R.B. contributed to study design, data analysis, result interpretation and manuscript editing; R.H.M. contributed to study design, data analysis and manuscript editing; R.J.X. and S.K.M. contributed to study design and manuscript editing; G.R. and B.C. contributed to software development and manuscript editing; D.-M.J. and Y.S. contributed to data analysis and manuscript editing; K.B., B.D.N., M.F.Z., M.D., O.V.A., A.S.K., A.N., M.M., M.W., D.N.F., E.L., W.Z., V.F., V.N.D., D.P.W., M.E.B., R.K., J.G., S.M.D. and T.D.L. provided access to data and contributed to manuscript editing.