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P4HA2: A link between tumor-intrinsic hypoxia, partial EMT and collective migration

Vaishali Aggarwal, Sarthak Sahoo, Vera S. Donnenberg, Priyanka Chakraborty, Mohit Kumar Jolly, View ORCID ProfileShilpa Sant
doi: https://doi.org/10.1101/2022.02.28.482409
Vaishali Aggarwal
aDepartment of Pharmaceutical Sciences, School of Pharmacy, University of Pittsburgh, Pittsburgh, PA
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Sarthak Sahoo
bCentre for BioSystems Science and Engineering, Indian Institute of Science, Bangalore, India
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Vera S. Donnenberg
aDepartment of Pharmaceutical Sciences, School of Pharmacy, University of Pittsburgh, Pittsburgh, PA
cDepartment of Cardiothoracic Surgery, School of Medicine, University of Pittsburgh, Pittsburgh, PA
dMcGowan Institute for Regenerative Medicine, University of Pittsburgh, Pittsburgh, PA
eUPMC-Hillman Cancer Center, University of Pittsburgh, Pittsburgh, PA
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Priyanka Chakraborty
bCentre for BioSystems Science and Engineering, Indian Institute of Science, Bangalore, India
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Mohit Kumar Jolly
bCentre for BioSystems Science and Engineering, Indian Institute of Science, Bangalore, India
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Shilpa Sant
aDepartment of Pharmaceutical Sciences, School of Pharmacy, University of Pittsburgh, Pittsburgh, PA
cDepartment of Cardiothoracic Surgery, School of Medicine, University of Pittsburgh, Pittsburgh, PA
dMcGowan Institute for Regenerative Medicine, University of Pittsburgh, Pittsburgh, PA
eUPMC-Hillman Cancer Center, University of Pittsburgh, Pittsburgh, PA
fDepartment of Bioengineering, Swanson School of Engineering; University of Pittsburgh, Pittsburgh, PA
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  • ORCID record for Shilpa Sant
  • For correspondence: shs149@pitt.edu
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Abstract

Epithelial-to-mesenchymal transition (EMT), a well-established phenomenon studied across pan-cancer types, has long been known to be a major player in driving tumor invasion and metastasis. Recent studies have highlighted the importance of partial EMT phenotypes in metastasis [1]. Initially thought as a transitional state between epithelial and mesenchymal phenotypic states, partial EMT state is now widely recognized as a key driver of intra-tumoral heterogeneity and phenotypic plasticity, further accelerating tumor metastasis and therapeutic resistance. However, how tumor microenvironments regulate partial EMT phenotypes remains unclear. We have developed unique size-controlled three-dimensional microtumor models that recapitulate tumor-intrinsic hypoxia and the emergence of collectively migrating cells. In this study, we further interrogate these microtumor models to understand how tumor-intrinsic hypoxia regulates partial EMT and collective migration in hypoxic large microtumors fabricated from T47D breast cancer cells. We also compared global gene expression profiles of hypoxic, migratory microtumors to that of non-hypoxic, non-migratory microtumors at early and late time-points. Using our microtumor models, we identified unique gene signatures for tumor-intrinsic hypoxia (early versus late), partial EMT and migration (pre-migratory versus migratory phenotype). Through differential gene expression analysis between the microtumor models with an overlap of hypoxia, partial EMT and migration signatures, we identified prolyl 4-hydroxylase subunit 2 (P4HA2), a hypoxia responsive gene, as a central regulator common to hypoxia, partial EMT and collective migration. Further, the inhibition of P4HA2 significantly blocked collective migration in hypoxic microtumors. Thus, using the integrated computational-experimental analysis, we identify the key role of P4HA2 in tumor-intrinsic hypoxia-driven partial EMT and collective migration.

Competing Interest Statement

The authors have declared no competing interest.

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Posted March 02, 2022.
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P4HA2: A link between tumor-intrinsic hypoxia, partial EMT and collective migration
Vaishali Aggarwal, Sarthak Sahoo, Vera S. Donnenberg, Priyanka Chakraborty, Mohit Kumar Jolly, Shilpa Sant
bioRxiv 2022.02.28.482409; doi: https://doi.org/10.1101/2022.02.28.482409
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P4HA2: A link between tumor-intrinsic hypoxia, partial EMT and collective migration
Vaishali Aggarwal, Sarthak Sahoo, Vera S. Donnenberg, Priyanka Chakraborty, Mohit Kumar Jolly, Shilpa Sant
bioRxiv 2022.02.28.482409; doi: https://doi.org/10.1101/2022.02.28.482409

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