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The conserved transcriptional program of metazoan male germ cells uncovers ancient origins of human infertility

View ORCID ProfileRion Brattig Correia, View ORCID ProfileJoana M. Almeida, View ORCID ProfileMargot J. Wyrwoll, Irene Julca, Daniel Sobral, Chandra Shekhar Misra, Leonardo G. Guilgur, Hans-Christian Schuppe, Neide Silva, Pedro Prudêncio, Ana Nóvoa, Ana S. Leocádio, Joana Bom, Moisés Mallo, Sabine Kliesch, Marek Mutwil, View ORCID ProfileLuis M. Rocha, View ORCID ProfileFrank Tüttelmann, View ORCID ProfileJörg D. Becker, View ORCID ProfilePaulo Navarro-Costa
doi: https://doi.org/10.1101/2022.03.02.482557
Rion Brattig Correia
1Instituto Gulbenkian de Ciência. Oeiras, Portugal
2Department of Systems Science and Industrial Engineering, Binghamton University. New York, USA
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  • ORCID record for Rion Brattig Correia
Joana M. Almeida
1Instituto Gulbenkian de Ciência. Oeiras, Portugal
3Instituto de Saúde Ambiental, Faculdade de Medicina, Universidade de Lisboa. Portugal
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  • ORCID record for Joana M. Almeida
Margot J. Wyrwoll
4Institute of Reproductive Genetics, University of Münster. Germany
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  • ORCID record for Margot J. Wyrwoll
Irene Julca
5School of Biological Sciences, Nanyang Technological University. Singapore
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Daniel Sobral
6Associate Laboratory i4HB - Institute for Health and Bioeconomy, NOVA School of Science and Technology, NOVA University Lisbon. Caparica, Portugal
7UCIBIO - Applied Molecular Biosciences Unit, Department of Life Sciences, NOVA School of Science and Technology, NOVA University Lisbon. Caparica, Portugal
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Chandra Shekhar Misra
1Instituto Gulbenkian de Ciência. Oeiras, Portugal
8Instituto de Tecnologia Química e Biológica António Xavier, Universidade Nova de Lisboa. Oeiras, Portugal
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Leonardo G. Guilgur
1Instituto Gulbenkian de Ciência. Oeiras, Portugal
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Hans-Christian Schuppe
9Clinic of Urology, Pediatric Urology and Andrology, Justus-Liebig-University. Giessen, Germany
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Neide Silva
1Instituto Gulbenkian de Ciência. Oeiras, Portugal
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Pedro Prudêncio
10Instituto de Medicina Molecular João Lobo Antunes, Faculdade de Medicina, Universidade de Lisboa. Portugal
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Ana Nóvoa
1Instituto Gulbenkian de Ciência. Oeiras, Portugal
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Ana S. Leocádio
1Instituto Gulbenkian de Ciência. Oeiras, Portugal
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Joana Bom
1Instituto Gulbenkian de Ciência. Oeiras, Portugal
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Moisés Mallo
1Instituto Gulbenkian de Ciência. Oeiras, Portugal
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Sabine Kliesch
11Centre of Reproductive Medicine and Andrology, University Hospital Münster. Germany
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Marek Mutwil
5School of Biological Sciences, Nanyang Technological University. Singapore
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Luis M. Rocha
1Instituto Gulbenkian de Ciência. Oeiras, Portugal
2Department of Systems Science and Industrial Engineering, Binghamton University. New York, USA
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Frank Tüttelmann
4Institute of Reproductive Genetics, University of Münster. Germany
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Jörg D. Becker
1Instituto Gulbenkian de Ciência. Oeiras, Portugal
8Instituto de Tecnologia Química e Biológica António Xavier, Universidade Nova de Lisboa. Oeiras, Portugal
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Paulo Navarro-Costa
1Instituto Gulbenkian de Ciência. Oeiras, Portugal
3Instituto de Saúde Ambiental, Faculdade de Medicina, Universidade de Lisboa. Portugal
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  • ORCID record for Paulo Navarro-Costa
  • For correspondence: navarro-costa@medicina.ulisboa.pt
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Abstract

Germ cells provide the cellular basis for sexual reproduction in multicellular animals. In males, germ cells differentiate into sperm, one of the most morphologically diverse eukaryotic cell types. Owing both to this remarkable diversity and to the rapid evolution of reproduction-related genes, the transcriptional program of male germ cells is widely regarded as divergent across species1,2. However, the possibility that these cells retain a distinctive evolutionarily-conserved genetic basis remains largely unexplored. Here we show, using phylostratigraphy, that the complex male germ cell transcriptome has an old evolutionary origin shared between vertebrate and invertebrate species. Through multilayer network analysis of the human, mouse and fruit fly meiotic transcriptome, we establish that old genes serve as a genetic scaffold from which complexity has evolved, and identify a core set of 79 ancient functional interactions at the heart of male germ cell identity. By silencing a cohort of 920 candidate genes likely to affect the acquisition and maintenance of this identity, we uncover 164 previously unknown spermatogenesis genes. Integrating this information with whole-exome sequencing data from azoospermic men reveals three novel genetic causes of human male infertility shared between species that have diverged for more than 600 million years. Our results redefine the importance of evolutionary history on human reproductive disease and illustrate the translational potential of a new synergy between comparative network biology and medical genetics. We anticipate that our open-access and easily-adaptable interdisciplinary research platform will be harnessed in the context of other cell types and diseases.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • ↵* Equal contribution

  • ↵** Equal contribution

  • ↵# e-mail: JDB (jbecker{at}itqb.unl.pt); PNC (navarro-costa{at}medicina.ulisboa.pt)

  • - Sup. Fig. 10 now includes fruit fly data and human pedigree analysis. - Minor edits to the text.

  • https://pages.igc.pt/meionav

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted March 23, 2022.
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The conserved transcriptional program of metazoan male germ cells uncovers ancient origins of human infertility
Rion Brattig Correia, Joana M. Almeida, Margot J. Wyrwoll, Irene Julca, Daniel Sobral, Chandra Shekhar Misra, Leonardo G. Guilgur, Hans-Christian Schuppe, Neide Silva, Pedro Prudêncio, Ana Nóvoa, Ana S. Leocádio, Joana Bom, Moisés Mallo, Sabine Kliesch, Marek Mutwil, Luis M. Rocha, Frank Tüttelmann, Jörg D. Becker, Paulo Navarro-Costa
bioRxiv 2022.03.02.482557; doi: https://doi.org/10.1101/2022.03.02.482557
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The conserved transcriptional program of metazoan male germ cells uncovers ancient origins of human infertility
Rion Brattig Correia, Joana M. Almeida, Margot J. Wyrwoll, Irene Julca, Daniel Sobral, Chandra Shekhar Misra, Leonardo G. Guilgur, Hans-Christian Schuppe, Neide Silva, Pedro Prudêncio, Ana Nóvoa, Ana S. Leocádio, Joana Bom, Moisés Mallo, Sabine Kliesch, Marek Mutwil, Luis M. Rocha, Frank Tüttelmann, Jörg D. Becker, Paulo Navarro-Costa
bioRxiv 2022.03.02.482557; doi: https://doi.org/10.1101/2022.03.02.482557

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