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Molecular conflicts disrupting centromere assembly contribute to Xenopus hybrid inviability

View ORCID ProfileMaiko Kitaoka, View ORCID ProfileOwen K. Smith, View ORCID ProfileAaron F. Straight, View ORCID ProfileRebecca Heald
doi: https://doi.org/10.1101/2022.03.06.483208
Maiko Kitaoka
1Department of Molecular and Cell Biology, University of California, Berkeley, CA 94720-3200, USA
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Owen K. Smith
2Department of Biochemistry, Stanford University School of Medicine, Stanford, CA 94305-5307, USA
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Aaron F. Straight
2Department of Biochemistry, Stanford University School of Medicine, Stanford, CA 94305-5307, USA
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Rebecca Heald
1Department of Molecular and Cell Biology, University of California, Berkeley, CA 94720-3200, USA
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  • For correspondence: bheald@berkeley.edu
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ABSTRACT

Although central to evolution, the causes of hybrid inviability that drive reproductive isolation are poorly understood. Embryonic lethality occurs when eggs of the frog X. tropicalis are fertilized with either X. laevis or X. borealis sperm. We observed that distinct subsets of paternal chromosomes failed to assemble functional centromeres, causing their mis-segregation during embryonic cell divisions. Core centromere DNA sequence analysis revealed little conservation among the three species, indicating that epigenetic mechanisms that normally operate to maintain centromere integrity are disrupted on specific paternal chromosomes in hybrids. In vitro reactions combining X. tropicalis egg extract with either X. laevis or X. borealis sperm chromosomes revealed that paternally matched or over-expressed centromeric histone CENP-A and its chaperone HJURP could rescue centromere assembly on affected chromosomes in interphase nuclei. However, whereas the X. laevis chromosomes maintained centromeric CENP-A in metaphase, X. borealis chromosomes did not, and also displayed ultra-thin regions containing ribosomal DNA. Both centromere assembly and morphology of X. borealis mitotic chromosomes could be rescued by inhibiting RNA Polymerase I or by preventing collapse of stalled DNA replication forks. These results indicate that specific paternal centromeres are inactivated in hybrids due to disruption of associated chromatin regions that interfere with CENP-A incorporation, at least in some cases due to conflicts between replication and transcription machineries. Thus, our findings highlight the dynamic nature of centromere maintenance and its susceptibility to disruption in vertebrate interspecies hybrids.

ONE SENTENCE SUMMARY Centromere incompatibilities in inviable Xenopus hybrids are sequence-independent and result from disruption of epigenetic pathways required for centromere maintenance.

Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted March 07, 2022.
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Molecular conflicts disrupting centromere assembly contribute to Xenopus hybrid inviability
Maiko Kitaoka, Owen K. Smith, Aaron F. Straight, Rebecca Heald
bioRxiv 2022.03.06.483208; doi: https://doi.org/10.1101/2022.03.06.483208
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Molecular conflicts disrupting centromere assembly contribute to Xenopus hybrid inviability
Maiko Kitaoka, Owen K. Smith, Aaron F. Straight, Rebecca Heald
bioRxiv 2022.03.06.483208; doi: https://doi.org/10.1101/2022.03.06.483208

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