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A comparison of six DNA extraction protocols for 16S, ITS, and shotgun metagenomic sequencing of microbial communities
View ORCID ProfileJustin P. Shaffer, View ORCID ProfileCarolina S. Carpenter, View ORCID ProfileCameron Martino, Rodolfo A. Salido, Jeremiah J. Minich, View ORCID ProfileMacKenzie Bryant, View ORCID ProfileKarenina Sanders, Tara Schwartz, Gregory Humphrey, Austin D. Swafford, View ORCID ProfileRob Knight
doi: https://doi.org/10.1101/2022.03.07.483343
Justin P. Shaffer
1Department of Pediatrics, University of California, San Diego, La Jolla, CA
Carolina S. Carpenter
2Scripps Institution of Oceanography, University of California, San Diego, La Jolla, CA
3Center for Microbiome Innovation, University of California, San Diego, La Jolla, CA
Cameron Martino
1Department of Pediatrics, University of California, San Diego, La Jolla, CA
3Center for Microbiome Innovation, University of California, San Diego, La Jolla, CA
4Bioinformatics and Systems Biology Program, University of California San Diego, La Jolla, CA
Rodolfo A. Salido
1Department of Pediatrics, University of California, San Diego, La Jolla, CA
5Department of Bioengineering, University of California San Diego, La Jolla, CA, USA
Jeremiah J. Minich
6Marine Biology Research Division, University of California, San Diego, La Jolla, CA
MacKenzie Bryant
1Department of Pediatrics, University of California, San Diego, La Jolla, CA
Karenina Sanders
1Department of Pediatrics, University of California, San Diego, La Jolla, CA
Tara Schwartz
1Department of Pediatrics, University of California, San Diego, La Jolla, CA
Gregory Humphrey
1Department of Pediatrics, University of California, San Diego, La Jolla, CA
Austin D. Swafford
3Center for Microbiome Innovation, University of California, San Diego, La Jolla, CA
7InterOme, Inc. Carlsbad, CA
Rob Knight
1Department of Pediatrics, University of California, San Diego, La Jolla, CA
3Center for Microbiome Innovation, University of California, San Diego, La Jolla, CA
8Micronoma Inc. San Diego, CA
9Department of Computer Science and Engineering, University of California, San Diego, La Jolla, CA
Posted March 08, 2022.
A comparison of six DNA extraction protocols for 16S, ITS, and shotgun metagenomic sequencing of microbial communities
Justin P. Shaffer, Carolina S. Carpenter, Cameron Martino, Rodolfo A. Salido, Jeremiah J. Minich, MacKenzie Bryant, Karenina Sanders, Tara Schwartz, Gregory Humphrey, Austin D. Swafford, Rob Knight
bioRxiv 2022.03.07.483343; doi: https://doi.org/10.1101/2022.03.07.483343
A comparison of six DNA extraction protocols for 16S, ITS, and shotgun metagenomic sequencing of microbial communities
Justin P. Shaffer, Carolina S. Carpenter, Cameron Martino, Rodolfo A. Salido, Jeremiah J. Minich, MacKenzie Bryant, Karenina Sanders, Tara Schwartz, Gregory Humphrey, Austin D. Swafford, Rob Knight
bioRxiv 2022.03.07.483343; doi: https://doi.org/10.1101/2022.03.07.483343
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