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The pho1;2a’-m1.1 allele of Phosphate1 conditions mis-regulation of the phosphorus starvation response in maize (Zea mays ssp. mays L.)

View ORCID ProfileAna Laura Alonso-Nieves, View ORCID ProfileM. Nancy Salazar-Vidal, View ORCID ProfileJ. Vladimir Torres-Rodríguez, Ricardo A. Chávez Montes, View ORCID ProfileLeonardo M. Pérez-Vázquez, View ORCID ProfileJulio A. Massange-Sánchez, View ORCID ProfileC. Stewart Gillmor, View ORCID ProfileRuairidh J. H. Sawers
doi: https://doi.org/10.1101/2022.03.10.483828
Ana Laura Alonso-Nieves
1Langebio, Unidad de Genómica Avanzada, Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional (CINVESTAV-IPN), Irapuato, C.P. 36824, Guanajuato, México
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M. Nancy Salazar-Vidal
1Langebio, Unidad de Genómica Avanzada, Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional (CINVESTAV-IPN), Irapuato, C.P. 36824, Guanajuato, México
2Department of Evolution and Ecology, University of California–Davis, One Shields Avenue, Davis, CA 95616, USA
3Division of Plant Sciences, Univ. of Missouri, Columbia, MO 65211, USA
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J. Vladimir Torres-Rodríguez
1Langebio, Unidad de Genómica Avanzada, Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional (CINVESTAV-IPN), Irapuato, C.P. 36824, Guanajuato, México
4Center for Plant Science Innovation, University of Nebraska-Lincoln, Lincoln, NE, 68588, USA
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Ricardo A. Chávez Montes
1Langebio, Unidad de Genómica Avanzada, Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional (CINVESTAV-IPN), Irapuato, C.P. 36824, Guanajuato, México
5Unidad de Biotecnología Vegetal, Centro de Investigación y Asistencia en Tecnología y Diseño del Estado de Jalisco A.C. (CIATEJ) Subsede Zapopan, Guadalajara, México
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Leonardo M. Pérez-Vázquez
1Langebio, Unidad de Genómica Avanzada, Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional (CINVESTAV-IPN), Irapuato, C.P. 36824, Guanajuato, México
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Julio A. Massange-Sánchez
1Langebio, Unidad de Genómica Avanzada, Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional (CINVESTAV-IPN), Irapuato, C.P. 36824, Guanajuato, México
5Unidad de Biotecnología Vegetal, Centro de Investigación y Asistencia en Tecnología y Diseño del Estado de Jalisco A.C. (CIATEJ) Subsede Zapopan, Guadalajara, México
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C. Stewart Gillmor
1Langebio, Unidad de Genómica Avanzada, Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional (CINVESTAV-IPN), Irapuato, C.P. 36824, Guanajuato, México
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Ruairidh J. H. Sawers
1Langebio, Unidad de Genómica Avanzada, Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional (CINVESTAV-IPN), Irapuato, C.P. 36824, Guanajuato, México
6Department of Plant Science, The Pennsylvania State University, State College, PA, USA
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  • For correspondence: rjs6686@psu.edu
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ABSTRACT

PHO1 proteins play a central role in plant inorganic phosphorus translocation and sensing. The maize (Zea mays ssp. mays) genome encodes two co-orthologs of the Arabidopsis PHO1 gene, designated ZmPho1;2a and ZmPho1;2b. Here, we report the characterization of the transposon-footprint allele Zmpho1;2a’-m1.1, which we refer to hereafter as pho1;2a. The pho1;2a allele is a stable derivative formed by excision of an Activator element from the ZmPho1;2a gene. The pho1;2a allele contains an 8 bp insertion at the point of excision that disrupts the reading frame and is predicted to generate a premature translational stop. We show that the pho1;2a allele is linked to a dosage-dependent reduction in transcript accumulation and a mild reduction in seedling growth that is enhanced under nutrient deficient conditions. Characterization of the shoot and root transcriptomes of seedlings segregating the pho1;2a mutation under different nutrient conditions revealed pho1;2a to have a dominant effect on patterns of transcript accumulation. Gene set enrichment analysis of the transcripts mis-regulated in pho1;2a mutants suggests that Pho1;2a functions in the fine-tuning of the transcriptional phosphate starvation response. We discuss our results with reference to possible genetic redundancy among maize Pho1 genes and in the context of reports linking functional variation in Pho1;2a to agronomically important traits.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • https://trace.ncbi.nlm.nih.gov/Traces/sra/?study=SRP287300

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted March 12, 2022.
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The pho1;2a’-m1.1 allele of Phosphate1 conditions mis-regulation of the phosphorus starvation response in maize (Zea mays ssp. mays L.)
Ana Laura Alonso-Nieves, M. Nancy Salazar-Vidal, J. Vladimir Torres-Rodríguez, Ricardo A. Chávez Montes, Leonardo M. Pérez-Vázquez, Julio A. Massange-Sánchez, C. Stewart Gillmor, Ruairidh J. H. Sawers
bioRxiv 2022.03.10.483828; doi: https://doi.org/10.1101/2022.03.10.483828
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The pho1;2a’-m1.1 allele of Phosphate1 conditions mis-regulation of the phosphorus starvation response in maize (Zea mays ssp. mays L.)
Ana Laura Alonso-Nieves, M. Nancy Salazar-Vidal, J. Vladimir Torres-Rodríguez, Ricardo A. Chávez Montes, Leonardo M. Pérez-Vázquez, Julio A. Massange-Sánchez, C. Stewart Gillmor, Ruairidh J. H. Sawers
bioRxiv 2022.03.10.483828; doi: https://doi.org/10.1101/2022.03.10.483828

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