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Structural insights into p300 regulation and acetylation-dependent genome organisation

View ORCID ProfileZiad Ibrahim, View ORCID ProfileTao Wang, View ORCID ProfileOlivier Destaing, View ORCID ProfileNicola Salvi, Naghmeh Hoghoughi, View ORCID ProfileClovis Chabert, View ORCID ProfileAlexandra Rusu, View ORCID ProfileJinjun Gao, Leonardo Feletto, View ORCID ProfileNicolas Reynoird, View ORCID ProfileThomas Schalch, View ORCID ProfileYingming Zhao, View ORCID ProfileMartin Blackledge, View ORCID ProfileSaadi Khochbin, View ORCID ProfileDaniel Panne
doi: https://doi.org/10.1101/2022.03.14.484228
Ziad Ibrahim
1Leicester Institute of Structural and Chemical Biology, Department of Molecular and Cell Biology, University of Leicester, Leicester, UK
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Tao Wang
2CNRS UMR 5309, INSERM U1209, Université Grenoble Alpes, Institute for Advanced Biosciences, Grenoble, France
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Olivier Destaing
2CNRS UMR 5309, INSERM U1209, Université Grenoble Alpes, Institute for Advanced Biosciences, Grenoble, France
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Nicola Salvi
3Institut de Biologie Structurale, CNRS, CEA, UGA, Grenoble, France
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Naghmeh Hoghoughi
2CNRS UMR 5309, INSERM U1209, Université Grenoble Alpes, Institute for Advanced Biosciences, Grenoble, France
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Clovis Chabert
2CNRS UMR 5309, INSERM U1209, Université Grenoble Alpes, Institute for Advanced Biosciences, Grenoble, France
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Alexandra Rusu
1Leicester Institute of Structural and Chemical Biology, Department of Molecular and Cell Biology, University of Leicester, Leicester, UK
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Jinjun Gao
4Ben May Department of Cancer Research, The University of Chicago, Chicago, IL 60637, USA
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Leonardo Feletto
1Leicester Institute of Structural and Chemical Biology, Department of Molecular and Cell Biology, University of Leicester, Leicester, UK
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Nicolas Reynoird
2CNRS UMR 5309, INSERM U1209, Université Grenoble Alpes, Institute for Advanced Biosciences, Grenoble, France
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Thomas Schalch
1Leicester Institute of Structural and Chemical Biology, Department of Molecular and Cell Biology, University of Leicester, Leicester, UK
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Yingming Zhao
4Ben May Department of Cancer Research, The University of Chicago, Chicago, IL 60637, USA
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Martin Blackledge
3Institut de Biologie Structurale, CNRS, CEA, UGA, Grenoble, France
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Saadi Khochbin
2CNRS UMR 5309, INSERM U1209, Université Grenoble Alpes, Institute for Advanced Biosciences, Grenoble, France
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Daniel Panne
1Leicester Institute of Structural and Chemical Biology, Department of Molecular and Cell Biology, University of Leicester, Leicester, UK
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  • ORCID record for Daniel Panne
  • For correspondence: daniel.panne@leicester.ac.uk
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Summary

Histone modifications are deposited by chromatin modifying enzymes and read out by proteins that recognize the modified state. BRD4-NUT is an oncogenic fusion protein of the acetyl lysine reader BRD4 that binds to the acetylase p300 and enables formation of long-range intra- and interchromosomal interactions. We here examine how acetylation reading and writing enable formation of such interactions. We show that NUT contains an acidic transcriptional activation domain that binds to the TAZ2 domain of p300. We use NMR to investigate the structure of the complex and found that the TAZ2 domain has an autoinhibitory role for p300. NUT-TAZ2 interaction or mutations found in cancer that interfere with autoinhibition by TAZ2 allosterically activate p300. p300 activation results in a self-organizing, acetylation-dependent feed-forward reaction that enables long-range interactions by bromodomain multivalent acetyl-lysine binding. We discuss the implications for chromatin organisation, gene regulation and dysregulation in disease.

Competing Interest Statement

Yingming Zhao is a founder, board member, advisor to, and inventor on patents licensed to PTM Biolabs Inc (Hangzhou, China and Chicago, IL) and Maponos Therapeutics Inc. (Chicago, IL). The other authors declare no competing interests.

Footnotes

  • Figure 4 and Figure S4 revised

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY 4.0 International license.
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Posted April 29, 2022.
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Structural insights into p300 regulation and acetylation-dependent genome organisation
Ziad Ibrahim, Tao Wang, Olivier Destaing, Nicola Salvi, Naghmeh Hoghoughi, Clovis Chabert, Alexandra Rusu, Jinjun Gao, Leonardo Feletto, Nicolas Reynoird, Thomas Schalch, Yingming Zhao, Martin Blackledge, Saadi Khochbin, Daniel Panne
bioRxiv 2022.03.14.484228; doi: https://doi.org/10.1101/2022.03.14.484228
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Structural insights into p300 regulation and acetylation-dependent genome organisation
Ziad Ibrahim, Tao Wang, Olivier Destaing, Nicola Salvi, Naghmeh Hoghoughi, Clovis Chabert, Alexandra Rusu, Jinjun Gao, Leonardo Feletto, Nicolas Reynoird, Thomas Schalch, Yingming Zhao, Martin Blackledge, Saadi Khochbin, Daniel Panne
bioRxiv 2022.03.14.484228; doi: https://doi.org/10.1101/2022.03.14.484228

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