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Plasmid stability in fluctuating environments: population genetics of multi-copy plasmids

View ORCID ProfileV Miró Pina, JCR Hernandez-Beltran, View ORCID ProfileA Siri-Jégousse, View ORCID ProfileS Palau, View ORCID ProfileR Peña-Miller, View ORCID ProfileA González Casanova
doi: https://doi.org/10.1101/2022.03.15.484385
V Miró Pina
1Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Barcelona, Spain
2Universitat Pompeu Fabra (UPF), Barcelona, Spain
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JCR Hernandez-Beltran
3Laboratorio de Biología de Sistemas, Centro de Ciencias Genómicas, Universidad Nacional Autónoma de México, 62210, Cuernavaca, México
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A Siri-Jégousse
4Departamento de Probabilidad y Estadística, Instituto de Investigación en Matemáticas Aplicadas y en Sistemas, Universidad Nacional Autónoma de México, México
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S Palau
4Departamento de Probabilidad y Estadística, Instituto de Investigación en Matemáticas Aplicadas y en Sistemas, Universidad Nacional Autónoma de México, México
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R Peña-Miller
3Laboratorio de Biología de Sistemas, Centro de Ciencias Genómicas, Universidad Nacional Autónoma de México, 62210, Cuernavaca, México
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A González Casanova
5Instituto de Matemáticas, Universidad Nacional Autónoma de México, México
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  • For correspondence: adriangcs@matem.unam.mx
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ABSTRACT

Plasmids are extra-chromosomal genetic elements that encode a wide variety of phenotypes and can be maintained in bacterial populations through vertical and horizontal transmission, thus increasing bacterial adaptation to hostile environmental conditions like those imposed by antimicrobial substances. To circumvent the segregational instability resulting from randomly distributing plasmids between daughter cells upon division, non-transmissible. plasmids tend to be carried in multiple copies per cell, with the added benefit of exhibiting increased gene dosage. But carrying multiple copies also results in a high metabolic burden to the bacterial host, therefore reducing the overall fitness of the population. This trade-off poses an existential question for plasmids: What is the optimal plasmid copy number? In this manuscript, we address this question using a combination of population genetics modeling with microbiology experiments consisting of Escherichia coli K12 bearing a multi-copy plasmid encoding for blaTEM-1, a gene conferring resistance to β-lactam antibiotics. We postulate and analyze a Wright-Fisher model to evaluate the interaction between selective pressure, the number of plasmid copies carried by each cell, and the energetic cost associated with plasmid bearing. By numerically determining the optimal plasmid copy number for constant and fluctuating selection regimes, we show that the stability of multi-copy plasmids is maximized at intermediate plasmid copy numbers. We conclude by arguing that plasmid copy number is a highly optimized evolutionary trait that depends on the rate of environmental fluctuation and balances the benefit between increased stability in the absence of selection with the burden associated with carrying multiple copies of the plasmid.

Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted March 16, 2022.
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Plasmid stability in fluctuating environments: population genetics of multi-copy plasmids
V Miró Pina, JCR Hernandez-Beltran, A Siri-Jégousse, S Palau, R Peña-Miller, A González Casanova
bioRxiv 2022.03.15.484385; doi: https://doi.org/10.1101/2022.03.15.484385
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Plasmid stability in fluctuating environments: population genetics of multi-copy plasmids
V Miró Pina, JCR Hernandez-Beltran, A Siri-Jégousse, S Palau, R Peña-Miller, A González Casanova
bioRxiv 2022.03.15.484385; doi: https://doi.org/10.1101/2022.03.15.484385

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