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The pyruvate dehydrogenase complex regulates mitophagic selectivity and matrix protein phosphorylation

Panagiota Kolitsida, Vladimir Nolic, Jianwen Zhou, Natalie M. Niemi, View ORCID ProfileJörn Dengjel, View ORCID ProfileHagai Abeliovich
doi: https://doi.org/10.1101/2022.03.16.484611
Panagiota Kolitsida
1Dept. of Biochemistry, Food Science and Nutrition, Hebrew University of Jerusalem, Rehovot, Israel
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Vladimir Nolic
1Dept. of Biochemistry, Food Science and Nutrition, Hebrew University of Jerusalem, Rehovot, Israel
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Jianwen Zhou
2Department of Biology, University of Fribourg, Chemin du Musée 10, 1700 Fribourg, Switzerland
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Natalie M. Niemi
3Department of Biochemistry and Molecular Biophysics, Washington University, St. Louis, MO
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Jörn Dengjel
2Department of Biology, University of Fribourg, Chemin du Musée 10, 1700 Fribourg, Switzerland
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Hagai Abeliovich
1Dept. of Biochemistry, Food Science and Nutrition, Hebrew University of Jerusalem, Rehovot, Israel
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  • ORCID record for Hagai Abeliovich
  • For correspondence: hagai.abeliovich@mail.huji.ac.il
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Abstract

The mitophagic degradation of mitochondrial matrix proteins is selective, reflecting a pre-engulfment sorting step. This selectivity is regulated through phosphorylation of mitochondrial matrix proteins by the matrix kinases Pkp1 and Pkp2, which in turn appear to be regulated by the phosphatase Aup1/Ptc6. However, these same proteins also regulate the phosphorylation status and catalytic activity of the yeast pyruvate dehydrogenase complex, which is critical for mitochondrial metabolism. To better understand the relationship between these two functions, we evaluated the role of the pyruvate dehydrogenase complex in mitophagic selectivity. Interestingly, we identified a novel function of the complex in regulating mitophagy, which is independent of its enzymatic activity. Our data suggest an allosteric mechanism, wherein the pyruvate dehydrogenase complex directly regulates the activity of its cognate kinases and phosphatases to determine the phosphorylation state of mitochondrial matrix proteins and their mitophagic fate, in response to metabolic cues.

Competing Interest Statement

The authors have declared no competing interest.

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  • Updated Supplemental Table I

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted August 03, 2022.
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The pyruvate dehydrogenase complex regulates mitophagic selectivity and matrix protein phosphorylation
Panagiota Kolitsida, Vladimir Nolic, Jianwen Zhou, Natalie M. Niemi, Jörn Dengjel, Hagai Abeliovich
bioRxiv 2022.03.16.484611; doi: https://doi.org/10.1101/2022.03.16.484611
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The pyruvate dehydrogenase complex regulates mitophagic selectivity and matrix protein phosphorylation
Panagiota Kolitsida, Vladimir Nolic, Jianwen Zhou, Natalie M. Niemi, Jörn Dengjel, Hagai Abeliovich
bioRxiv 2022.03.16.484611; doi: https://doi.org/10.1101/2022.03.16.484611

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