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Biomolecular condensation orchestrates clathrin-mediated endocytosis in plants

Jonathan Michael Dragwidge, Yanning Wang, Lysiane Brocard, Andreas De Meyer, Roman Hudeček, Dominique Eeckhout, Peter Grones, Matthieu Buridan, Clément Chambaud, Přemysl Pejchar, Martin Potocký, Joanna Winkler, Michael Vandorpe, Nelson Serre, Matyáš Fendrych, Amelie Bernard, Geert De Jaeger, Roman Pleskot, Xiaofeng Fang, View ORCID ProfileDaniël Van Damme
doi: https://doi.org/10.1101/2022.03.17.484738
Jonathan Michael Dragwidge
1Department of Plant Biotechnology and Bioinformatics, Ghent University, Technologiepark 71, 9052 Ghent, Belgium
2VIB Center for Plant Systems Biology, Technologiepark 71, 9052 Ghent, Belgium
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  • For correspondence: jodra@psb.vib-ugent.be dadam@psb.vib-ugent.be
Yanning Wang
3Center for Plant Biology, School of Life Sciences, Tsinghua University, Beijing, China
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Lysiane Brocard
4Univ. Bordeaux, CNRS, INSERM, Bordeaux Imaging Center, BIC, UAR 3420, US 4, F-33000 Bordeaux, France
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Andreas De Meyer
1Department of Plant Biotechnology and Bioinformatics, Ghent University, Technologiepark 71, 9052 Ghent, Belgium
2VIB Center for Plant Systems Biology, Technologiepark 71, 9052 Ghent, Belgium
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Roman Hudeček
5Institute of Experimental Botany of the Czech Academy of Sciences, Rozvojová 263, 16502 Prague 6, Czech Republic
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Dominique Eeckhout
1Department of Plant Biotechnology and Bioinformatics, Ghent University, Technologiepark 71, 9052 Ghent, Belgium
2VIB Center for Plant Systems Biology, Technologiepark 71, 9052 Ghent, Belgium
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Peter Grones
1Department of Plant Biotechnology and Bioinformatics, Ghent University, Technologiepark 71, 9052 Ghent, Belgium
2VIB Center for Plant Systems Biology, Technologiepark 71, 9052 Ghent, Belgium
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Matthieu Buridan
4Univ. Bordeaux, CNRS, INSERM, Bordeaux Imaging Center, BIC, UAR 3420, US 4, F-33000 Bordeaux, France
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Clément Chambaud
6Laboratoire de Biogenèse Membranaire, UMR 5200, CNRS, Univ. Bordeaux, F-33140 Villenave d’Ornon
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Přemysl Pejchar
5Institute of Experimental Botany of the Czech Academy of Sciences, Rozvojová 263, 16502 Prague 6, Czech Republic
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Martin Potocký
5Institute of Experimental Botany of the Czech Academy of Sciences, Rozvojová 263, 16502 Prague 6, Czech Republic
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Joanna Winkler
1Department of Plant Biotechnology and Bioinformatics, Ghent University, Technologiepark 71, 9052 Ghent, Belgium
2VIB Center for Plant Systems Biology, Technologiepark 71, 9052 Ghent, Belgium
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Michael Vandorpe
1Department of Plant Biotechnology and Bioinformatics, Ghent University, Technologiepark 71, 9052 Ghent, Belgium
2VIB Center for Plant Systems Biology, Technologiepark 71, 9052 Ghent, Belgium
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Nelson Serre
7Department of Experimental Plant Biology, Faculty of Sciences, Charles University, Prague, Czech Republic
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Matyáš Fendrych
7Department of Experimental Plant Biology, Faculty of Sciences, Charles University, Prague, Czech Republic
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Amelie Bernard
6Laboratoire de Biogenèse Membranaire, UMR 5200, CNRS, Univ. Bordeaux, F-33140 Villenave d’Ornon
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Geert De Jaeger
1Department of Plant Biotechnology and Bioinformatics, Ghent University, Technologiepark 71, 9052 Ghent, Belgium
2VIB Center for Plant Systems Biology, Technologiepark 71, 9052 Ghent, Belgium
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Roman Pleskot
5Institute of Experimental Botany of the Czech Academy of Sciences, Rozvojová 263, 16502 Prague 6, Czech Republic
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Xiaofeng Fang
3Center for Plant Biology, School of Life Sciences, Tsinghua University, Beijing, China
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Daniël Van Damme
1Department of Plant Biotechnology and Bioinformatics, Ghent University, Technologiepark 71, 9052 Ghent, Belgium
2VIB Center for Plant Systems Biology, Technologiepark 71, 9052 Ghent, Belgium
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  • ORCID record for Daniël Van Damme
  • For correspondence: jodra@psb.vib-ugent.be dadam@psb.vib-ugent.be
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Summary

Clathrin-mediated endocytosis (CME) is an essential cellular internalisation pathway involving the dynamic assembly of clathrin and accessory proteins to form membrane-bound vesicles. In plants, the evolutionarily ancient TSET/TPLATE complex (TPC) plays an essential, but not well-defined role in CME. Here, we show that two highly disordered TPC subunits, AtEH1 and AtEH2 function as scaffolds to drive biomolecular condensation of the complex. These condensates specifically nucleate on the plasma membrane through interactions with anionic phospholipids, and facilitate the dynamic recruitment and assembly of clathrin, early-, and late-stage endocytic accessory proteins. Importantly, clathrin forms ordered assemblies within the condensate environment. Biomolecular condensation therefore acts to promote dynamic protein assemblies throughout clathrin-mediated endocytosis. Furthermore, the disordered region sequence properties of AtEH1 regulate the material properties of the endocytic condensates in vivo and alteration of these material properties influences endocytosis dynamics, and consequently plant adaptive growth.

Highlights

  • AtEH subunits are endocytic scaffolds which drive condensation of the TPC

  • AtEH1 condensates nucleate on the plasma membrane via lipid interactions

  • Condensation of AtEH1/TPC facilitates clathrin re-arrangement and assembly

  • AtEH1 IDR1 composition controls condensate properties to regulate endocytosis

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • Additional experimental data was added to the manuscript, including improved ET data as well as FRAP data on IDR mutated AtEH isoforms, mutant rescue data and the effect of mutating the first IDR region of AtEH1/Pan1 on endocytic dynamics and plant adaptive growth. The text has been revised accordingly.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted March 18, 2023.
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Biomolecular condensation orchestrates clathrin-mediated endocytosis in plants
Jonathan Michael Dragwidge, Yanning Wang, Lysiane Brocard, Andreas De Meyer, Roman Hudeček, Dominique Eeckhout, Peter Grones, Matthieu Buridan, Clément Chambaud, Přemysl Pejchar, Martin Potocký, Joanna Winkler, Michael Vandorpe, Nelson Serre, Matyáš Fendrych, Amelie Bernard, Geert De Jaeger, Roman Pleskot, Xiaofeng Fang, Daniël Van Damme
bioRxiv 2022.03.17.484738; doi: https://doi.org/10.1101/2022.03.17.484738
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Biomolecular condensation orchestrates clathrin-mediated endocytosis in plants
Jonathan Michael Dragwidge, Yanning Wang, Lysiane Brocard, Andreas De Meyer, Roman Hudeček, Dominique Eeckhout, Peter Grones, Matthieu Buridan, Clément Chambaud, Přemysl Pejchar, Martin Potocký, Joanna Winkler, Michael Vandorpe, Nelson Serre, Matyáš Fendrych, Amelie Bernard, Geert De Jaeger, Roman Pleskot, Xiaofeng Fang, Daniël Van Damme
bioRxiv 2022.03.17.484738; doi: https://doi.org/10.1101/2022.03.17.484738

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