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Configurable Compartmentation Enables In Vitro Reconstitution of Sustained Synthetic Biology Systems

Luyao Li, View ORCID ProfileRong Zhang, Xintong Tian, Ting Li, Bingchun Pu, Conghui Ma, Fang Ba, Chenwei Xiong, Yunfeng Shi, Jian Li, Jay Keasling, Jingwei Zhang, Yifan Liu
doi: https://doi.org/10.1101/2022.03.19.484972
Luyao Li
1School of Physical Science and Technology, ShanghaiTech University, Shanghai 201210, China
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Rong Zhang
1School of Physical Science and Technology, ShanghaiTech University, Shanghai 201210, China
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  • ORCID record for Rong Zhang
Xintong Tian
1School of Physical Science and Technology, ShanghaiTech University, Shanghai 201210, China
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Ting Li
2State Key Laboratory of Genetic Engineering, School of Life Sciences, Fudan University, Shanghai 200438, China
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Bingchun Pu
3Department of Immunology and Microbiology, Shanghai Jiao Tong University School of Medicine, Shanghai 200025, China
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Conghui Ma
1School of Physical Science and Technology, ShanghaiTech University, Shanghai 201210, China
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Fang Ba
1School of Physical Science and Technology, ShanghaiTech University, Shanghai 201210, China
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Chenwei Xiong
1School of Physical Science and Technology, ShanghaiTech University, Shanghai 201210, China
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Yunfeng Shi
2State Key Laboratory of Genetic Engineering, School of Life Sciences, Fudan University, Shanghai 200438, China
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Jian Li
1School of Physical Science and Technology, ShanghaiTech University, Shanghai 201210, China
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  • For correspondence: liuyf6@shanghaitech.edu.cn jingwei_zhang@fudan.edu.cn lijian@shanghaitech.edu.cn
Jay Keasling
4Joint BioEnergy Institute, Emeryville, California 94608, United States
5Biological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
6Department of Chemical and Biomolecular Engineering & Department of Bioengineering, University of California, Berkeley, California 94720, United States
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Jingwei Zhang
2State Key Laboratory of Genetic Engineering, School of Life Sciences, Fudan University, Shanghai 200438, China
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  • For correspondence: liuyf6@shanghaitech.edu.cn jingwei_zhang@fudan.edu.cn lijian@shanghaitech.edu.cn
Yifan Liu
1School of Physical Science and Technology, ShanghaiTech University, Shanghai 201210, China
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  • For correspondence: liuyf6@shanghaitech.edu.cn jingwei_zhang@fudan.edu.cn lijian@shanghaitech.edu.cn
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Abstract

The compartmentalized and communicative nature of biological cells contributes to the complexity and endurance of living organisms. We present a general compartmentalization strategy for in vitro systems that inherits the passive transport phenomenon of biology. The strategy incorporates layered, micrometer-sized, hydrogel-based compartments featuring configurability in composition, functionality and selective permeability of biomolecules. We demonstrated the utility of the strategy by reconstituting a compartmentalized in vitro protein synthesis system which supports multiple rounds of reactions and compartmentalized living bacteria-based biosensors which sustain long-lasting functioning with markedly enhanced fitness in complex environments. The strategy should be widely applicable for constructing complex, robust and sustained in vitro synthetic molecular and cellular systems, paving the way for their practical applications.

Competing Interest Statement

A patent of methods described in this paper is under application.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted May 11, 2022.
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Configurable Compartmentation Enables In Vitro Reconstitution of Sustained Synthetic Biology Systems
Luyao Li, Rong Zhang, Xintong Tian, Ting Li, Bingchun Pu, Conghui Ma, Fang Ba, Chenwei Xiong, Yunfeng Shi, Jian Li, Jay Keasling, Jingwei Zhang, Yifan Liu
bioRxiv 2022.03.19.484972; doi: https://doi.org/10.1101/2022.03.19.484972
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Configurable Compartmentation Enables In Vitro Reconstitution of Sustained Synthetic Biology Systems
Luyao Li, Rong Zhang, Xintong Tian, Ting Li, Bingchun Pu, Conghui Ma, Fang Ba, Chenwei Xiong, Yunfeng Shi, Jian Li, Jay Keasling, Jingwei Zhang, Yifan Liu
bioRxiv 2022.03.19.484972; doi: https://doi.org/10.1101/2022.03.19.484972

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