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Solvent-induced allosteric transition of the Hepatitis C virus human cellular receptor CD81 large extracellular loop

C. Risueño, D. Charro, View ORCID ProfileN. G. A. Abrescia, View ORCID ProfileI. Coluzza
doi: https://doi.org/10.1101/2022.03.21.485124
C. Risueño
aStructure and Cell Biology of Viruses Lab, Center for Cooperative Research in Biosciences (CIC bioGUNE), Basque Research and Technology Alliance (BRTA), Derio Spain
bCenter for Cooperative Research in Biomaterials (CIC biomaGUNE), BRTA, San Sebastian, Spain
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D. Charro
aStructure and Cell Biology of Viruses Lab, Center for Cooperative Research in Biosciences (CIC bioGUNE), Basque Research and Technology Alliance (BRTA), Derio Spain
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N. G. A. Abrescia
aStructure and Cell Biology of Viruses Lab, Center for Cooperative Research in Biosciences (CIC bioGUNE), Basque Research and Technology Alliance (BRTA), Derio Spain
cBCMaterials, Basque Center for Materials, Applications and Nanostructures, Bld. Martina Casiano, UPV/EHU Science Park, Barrio Sarriena s/n, 48940 Leioa, Spain
eCentro de Investigación Biomédica en Red de Enfermedades Hepáticas y Digestivas (CIBERehd), Instituto de Salud Carlos III, Madrid Spain
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  • For correspondence: nabrescia@cicbiogune.es ivan.coluzza@bcmaterials.net
I. Coluzza
bCenter for Cooperative Research in Biomaterials (CIC biomaGUNE), BRTA, San Sebastian, Spain
cBCMaterials, Basque Center for Materials, Applications and Nanostructures, Bld. Martina Casiano, UPV/EHU Science Park, Barrio Sarriena s/n, 48940 Leioa, Spain
dIKERBASQUE, Basque Foundation for Science, Bilbao Spain
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  • For correspondence: nabrescia@cicbiogune.es ivan.coluzza@bcmaterials.net
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Abstract

CD81 is a tetraspanin receptor that clusters into microdomains to mediate cell signalling processes. CD81 is also one of the four primary cellular receptors of the Hepatitis C virus (HCV). Previous structural studies on the α-helical CD81 large-extracellular-loop domain (CD81LEL) have shown that it can adopt different conformations (from closed to open), likely depending on the environmental conditions. This conformational plasticity has been implicated in the endosomal fusion of HCV upon entry. However, the precise mechanism governing the CD81LEL plasticity has remained elusive so far.

Here, by combining molecular dynamics simulations and circular dichroism experiments on wt-CD81LEL and two mutants at different endosomal pH conditions, pH 5.5 and pH 4.6, we show that the modulation of the solvation shell governs the plasticity of CD81LEL. The primarily implicated residues are D139 and E188, respectively, located near a loop preceded by a helix. At acidic conditions, their interaction with water is reduced, causing a re-ordering of the water molecules, and thus triggering the dynamics of CD81LEL. However, mutations E188Q and D139N retain the solvation shell and restrict the conformational space that the head subdomain can explore.

We propose that residues E188 and D139 control the solvent-induced allosteric transition of the CD81LEL domain. This mechanism might play a role in other cellular receptors that function along the endosomal pathway.

Popular Summary Understanding the cellular mechanisms that are exploited by viruses to infect their host is key for the development of therapeutics. Here, in the context of Hepatitis C Virus infection we report the mechanism that governs the plasticity of the extra-cellular domain of tetraspanin CD81, one of the major cellular receptors of this virus. The mechanism proposed here is a novel form of solvent-induced allosteric transition in proteins mediated by two antenna residues located in the head subdomain of CD81. We propose that it could serve as a pH sensing strategy to time the endosomal pathway and trigger a signal at the right time for HCV fusion.

Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted March 21, 2022.
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Solvent-induced allosteric transition of the Hepatitis C virus human cellular receptor CD81 large extracellular loop
C. Risueño, D. Charro, N. G. A. Abrescia, I. Coluzza
bioRxiv 2022.03.21.485124; doi: https://doi.org/10.1101/2022.03.21.485124
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Solvent-induced allosteric transition of the Hepatitis C virus human cellular receptor CD81 large extracellular loop
C. Risueño, D. Charro, N. G. A. Abrescia, I. Coluzza
bioRxiv 2022.03.21.485124; doi: https://doi.org/10.1101/2022.03.21.485124

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