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Multicellular PI control for gene regulation in microbial consortia

View ORCID ProfileVittoria Martinelli, View ORCID ProfileDavide Salzano, View ORCID ProfileDavide Fiore, View ORCID ProfileMario di Bernardo
doi: https://doi.org/10.1101/2022.03.21.485171
Vittoria Martinelli
1Department of Electrical Engineering and Information Technology, University of Naples Federico II, Via Claudio 21, 80125 Naples, Italy
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Davide Salzano
1Department of Electrical Engineering and Information Technology, University of Naples Federico II, Via Claudio 21, 80125 Naples, Italy
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Davide Fiore
3Department of Mathematics and Applications “R. Caccioppoli”, University of Naples Federico II, Via Cintia, Monte S.Angelo, 80126 Naples, Italy
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Mario di Bernardo
1Department of Electrical Engineering and Information Technology, University of Naples Federico II, Via Claudio 21, 80125 Naples, Italy
2SSM - School for Advanced Studies, Naples, Italy
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  • For correspondence: mario.dibernardo@unina.it
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Abstract

We describe two multicellular implementations of the classical P and PI feedback controllers for the regulation of gene expression in a target cell population. Specifically, we propose to distribute the proportional and integral actions over two different cellular populations in a microbial consortium comprising a third target population whose output needs to be regulated. By engineering communication among the different cellular populations via appropriate orthogonal quorum sensing molecules, we are able to close the feedback loop across the consortium. We derive analytical conditions on the biological parameters guaranteeing the regulation of the output of the target population and we validate the robustness and modularity of proposed control schemes via in silico experiments in BSim, a realistic agent-based simulator of bacterial populations.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • This work has received funding from the research grant “BIOMASS” from the University of Naples Federico II - “Finanziamento della Ricerca di Ateneo (FRA) - Linea B”.

  • (email: vittoria.martinelli{at}unina.it, davide.salzano{at}unina.it)

  • (email: davide.fiore{at}unina.it).

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted March 22, 2022.
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Multicellular PI control for gene regulation in microbial consortia
Vittoria Martinelli, Davide Salzano, Davide Fiore, Mario di Bernardo
bioRxiv 2022.03.21.485171; doi: https://doi.org/10.1101/2022.03.21.485171
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Multicellular PI control for gene regulation in microbial consortia
Vittoria Martinelli, Davide Salzano, Davide Fiore, Mario di Bernardo
bioRxiv 2022.03.21.485171; doi: https://doi.org/10.1101/2022.03.21.485171

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