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Increased gene dosage and mRNA expression from chromosomal duplications in C. elegans

View ORCID ProfileBhavana Ragipani, View ORCID ProfileSarah Elizabeth Albritton, View ORCID ProfileAna Karina Morao, Diogo Mesquita, View ORCID ProfileMaxwell Kramer, View ORCID ProfileSevinç Ercan
doi: https://doi.org/10.1101/2022.03.22.485368
Bhavana Ragipani
1Department of Biology, Center for Genomics and Systems Biology, New York University, New York, NY 10003
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Sarah Elizabeth Albritton
1Department of Biology, Center for Genomics and Systems Biology, New York University, New York, NY 10003
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  • ORCID record for Sarah Elizabeth Albritton
Ana Karina Morao
1Department of Biology, Center for Genomics and Systems Biology, New York University, New York, NY 10003
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Diogo Mesquita
1Department of Biology, Center for Genomics and Systems Biology, New York University, New York, NY 10003
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Maxwell Kramer
1Department of Biology, Center for Genomics and Systems Biology, New York University, New York, NY 10003
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Sevinç Ercan
1Department of Biology, Center for Genomics and Systems Biology, New York University, New York, NY 10003
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  • For correspondence: se71@nyu.edu
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ABSTRACT

Isolation of copy number variations and chromosomal duplications at high frequency in the laboratory suggested that Caenorhabditis elegans tolerates increased gene dosage. Here we addressed if a general dosage compensation mechanism acts at the level of mRNA expression in C. elegans. We characterized gene dosage and mRNA expression in three chromosomal duplications and a fosmid integration strain using DNA-seq and mRNA-seq. Our results show that on average, increased gene dosage leads to increased mRNA expression, pointing to a lack of genome-wide dosage compensation. Different genes within the same chromosomal duplication show variable levels of mRNA increase, suggesting feedback regulation of individual genes. Somatic dosage compensation and germline repression reduce the level of mRNA increase from X chromosomal duplications. Together, our results show a lack of genome-wide dosage compensation mechanism acting at the mRNA level in C. elegans and highlight the role of epigenetic and individual gene regulation contributing to the varied consequences of increased gene dosage.

Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted March 23, 2022.
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Increased gene dosage and mRNA expression from chromosomal duplications in C. elegans
Bhavana Ragipani, Sarah Elizabeth Albritton, Ana Karina Morao, Diogo Mesquita, Maxwell Kramer, Sevinç Ercan
bioRxiv 2022.03.22.485368; doi: https://doi.org/10.1101/2022.03.22.485368
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Increased gene dosage and mRNA expression from chromosomal duplications in C. elegans
Bhavana Ragipani, Sarah Elizabeth Albritton, Ana Karina Morao, Diogo Mesquita, Maxwell Kramer, Sevinç Ercan
bioRxiv 2022.03.22.485368; doi: https://doi.org/10.1101/2022.03.22.485368

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