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Distinct regulation of Hox genes by Polycomb Group genes in a crustacean

View ORCID ProfileDennis A Sun, Yuri Takahashi, Rebecca J Chang, View ORCID ProfileNipam H Patel
doi: https://doi.org/10.1101/2022.03.27.485719
Dennis A Sun
1Department of Molecular and Cell Biology, University of California, Berkeley
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Yuri Takahashi
1Department of Molecular and Cell Biology, University of California, Berkeley
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Rebecca J Chang
1Department of Molecular and Cell Biology, University of California, Berkeley
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Nipam H Patel
2Marine Biological Laboratory, Woods Hole, MA
3Department of Organismal Biology and Anatomy, University of Chicago, Chicago, USA
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  • For correspondence: npatel@mbl.edu
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Abstract

Non-insect crustaceans exhibit tremendous body plan diversity. The evolution of diverse patterns of Hox gene expression has been implicated as a primary driver of body plan evolution between crustacean groups, but the mechanisms underlying Hox regulatory evolution remain unknown. We identify Polycomb and Trithorax Group proteins, crucial for proper Hox regulation across bilaterians, in the genome of the amphipod crustacean Parhyale hawaiensis, and demonstrate their essential functions in crustacean Hox regulation and embryonic development using CRISPR-Cas9 mutagenesis. Examination of Hox misexpression patterns between individual Hox genes with respect to timing, tissue, and PcG mutant gene in mutant embryos reveals that each crustacean Hox gene follows its own idiosyncratic regulatory mechanism. These results suggest a distinct regulation of Hox genes that may have enabled crustacean body plan evolution.

Primary Findings - The genome of the amphipod crustacean Parhyale hawaiensis contains all core Polycomb Group (PcG) and Trithorax Group (TrxG) proteins

- CRISPR-Cas9 mutagenesis of PcG proteins induces homeotic transformations and misexpression of Hox genes that differ from similar experiments in insects

- PcG knockout embryos show proper initiation of Hox expression boundaries at early developmental stages

- Each of the three posterior Hox genes in Parhyale displays distinct patterns of misexpression in response to PcG knockout

- Hox regulation appears to occur via different mechanisms in the nervous system vs. limbs

- PcG phenotypes reveal the potential for distinct layers of Hox regulation in crustaceans

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Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted March 28, 2022.
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Distinct regulation of Hox genes by Polycomb Group genes in a crustacean
Dennis A Sun, Yuri Takahashi, Rebecca J Chang, Nipam H Patel
bioRxiv 2022.03.27.485719; doi: https://doi.org/10.1101/2022.03.27.485719
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Distinct regulation of Hox genes by Polycomb Group genes in a crustacean
Dennis A Sun, Yuri Takahashi, Rebecca J Chang, Nipam H Patel
bioRxiv 2022.03.27.485719; doi: https://doi.org/10.1101/2022.03.27.485719

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