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Reference-based cell type matching of spatial transcriptomics data
View ORCID ProfileYun Zhang, View ORCID ProfileJeremy A. Miller, View ORCID ProfileJeongbin Park, View ORCID ProfileBoudewijn P. Lelieveldt, View ORCID ProfileBrian D. Aevermann, View ORCID ProfileTommaso Biancalani, View ORCID ProfileCharles Comiter, View ORCID ProfileChristoffer Mattsson Langseth, Brian Long, Viktor Petukhov, View ORCID ProfileGabriele Scalia, View ORCID ProfileEeshit Dhaval Vaishnav, Yilin Zhao, View ORCID ProfileEd S. Lein, View ORCID ProfileRichard H. Scheuermann
doi: https://doi.org/10.1101/2022.03.28.486139
Yun Zhang
1J. Craig Venter Institute, La Jolla, CA, USA
Jeremy A. Miller
2Allen Institute for Brain Science, Seattle, WA, USA
Jeongbin Park
3School of Biomedical Convergence Engineering, Pusan National University, Korea
Boudewijn P. Lelieveldt
4LKEB, Dept of Radiology, Leiden University Medical Center, Leiden, the Netherlands
5Pattern Recognition and Bioinformatics group, Delft University of Technology, Delft, The Netherlands
Brian D. Aevermann
1J. Craig Venter Institute, La Jolla, CA, USA
Tommaso Biancalani
6Broad Institute of MIT and Harvard, Cambridge, MA, USA
Charles Comiter
6Broad Institute of MIT and Harvard, Cambridge, MA, USA
Christoffer Mattsson Langseth
7Science for Life Laboratory, Department of Biochemistry and Biophysics, Stockholm University, Stockholm, Sweden
Brian Long
2Allen Institute for Brain Science, Seattle, WA, USA
Viktor Petukhov
8Biotech Research and Innovation Centre, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark
9Department of Biomedical Informatics, Harvard Medical School, Boston, MA, USA
Gabriele Scalia
6Broad Institute of MIT and Harvard, Cambridge, MA, USA
Eeshit Dhaval Vaishnav
6Broad Institute of MIT and Harvard, Cambridge, MA, USA
Yilin Zhao
2Allen Institute for Brain Science, Seattle, WA, USA
Ed S. Lein
2Allen Institute for Brain Science, Seattle, WA, USA
Richard H. Scheuermann
1J. Craig Venter Institute, La Jolla, CA, USA
10Department of Pathology, University of California, San Diego, CA, USA
11Division of Vaccine Discovery, La Jolla Institute for Immunology, La Jolla, CA, USA
Posted March 29, 2022.
Reference-based cell type matching of spatial transcriptomics data
Yun Zhang, Jeremy A. Miller, Jeongbin Park, Boudewijn P. Lelieveldt, Brian D. Aevermann, Tommaso Biancalani, Charles Comiter, Christoffer Mattsson Langseth, Brian Long, Viktor Petukhov, Gabriele Scalia, Eeshit Dhaval Vaishnav, Yilin Zhao, Ed S. Lein, Richard H. Scheuermann
bioRxiv 2022.03.28.486139; doi: https://doi.org/10.1101/2022.03.28.486139
Reference-based cell type matching of spatial transcriptomics data
Yun Zhang, Jeremy A. Miller, Jeongbin Park, Boudewijn P. Lelieveldt, Brian D. Aevermann, Tommaso Biancalani, Charles Comiter, Christoffer Mattsson Langseth, Brian Long, Viktor Petukhov, Gabriele Scalia, Eeshit Dhaval Vaishnav, Yilin Zhao, Ed S. Lein, Richard H. Scheuermann
bioRxiv 2022.03.28.486139; doi: https://doi.org/10.1101/2022.03.28.486139
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