Robust inference of expression state in bulk and single-cell RNA-Seq using curated intergenic regions

Sara S. Fonseca Costa; Marta Rosikiewicz; Julien Roux; Julien Wollbrett; Frederic B. Bastian; Marc Robinson-Rechavi

doi:10.1101/2022.03.31.486555

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Robust inference of expression state in bulk and single-cell RNA-Seq using curated intergenic regions

View ORCID ProfileSara S. Fonseca Costa, View ORCID ProfileMarta Rosikiewicz, View ORCID ProfileJulien Roux, View ORCID ProfileJulien Wollbrett, View ORCID ProfileFrederic B. Bastian, View ORCID ProfileMarc Robinson-Rechavi

doi: https://doi.org/10.1101/2022.03.31.486555

Sara S. Fonseca Costa

1Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland

2SIB Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland

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ORCID record for Sara S. Fonseca Costa

Marta Rosikiewicz

3SOPHiA GENETICS, Switzerland

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ORCID record for Marta Rosikiewicz

Julien Roux

2SIB Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland

4Bioinformatics Core Facility, Department of Biomedicine, University of Basel, Switzerland

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ORCID record for Julien Roux

Julien Wollbrett

1Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland

2SIB Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland

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ORCID record for Julien Wollbrett

Frederic B. Bastian

1Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland

2SIB Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland

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Marc Robinson-Rechavi

1Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland

2SIB Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland

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ORCID record for Marc Robinson-Rechavi
For correspondence: marc.robinson-rechavi@unil.ch

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https://github.com/BgeeDB/Methods_RNASeq_expression_calls
https://github.com/BgeeDB/BgeeCall/tree/calls_paper

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Posted April 01, 2022.

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Robust inference of expression state in bulk and single-cell RNA-Seq using curated intergenic regions

Sara S. Fonseca Costa, Marta Rosikiewicz, Julien Roux, Julien Wollbrett, Frederic B. Bastian, Marc Robinson-Rechavi

bioRxiv 2022.03.31.486555; doi: https://doi.org/10.1101/2022.03.31.486555

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Robust inference of expression state in bulk and single-cell RNA-Seq using curated intergenic regions

Sara S. Fonseca Costa, Marta Rosikiewicz, Julien Roux, Julien Wollbrett, Frederic B. Bastian, Marc Robinson-Rechavi

bioRxiv 2022.03.31.486555; doi: https://doi.org/10.1101/2022.03.31.486555

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