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Single-cell multimodal modeling with deep parametric inference

View ORCID ProfileHuan Hu
doi: https://doi.org/10.1101/2022.04.04.486878
Huan Hu
1Department of Physics, and Fujian Provincial Key Laboratory for Soft Functional Materials Research, Xiamen University, Xiamen, 361005, China
2National Institute for Data Science in Health and Medicine, and State Key Laboratory of Cellular Stress Biology, Innovation Center for Cell Signaling Network, Xiamen University, Xiamen, 361005 China
3Wenzhou Institute, University of Chinese Academy of Sciences, and Oujiang Laboratory (Zhejiang Lab for Regenerative Medicine, Vision and Brain Health), Wenzhou, Zhejiang 325001, China
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Abstract

The paired measurement of multiple modalities, known as the multimodal analysis, is an exciting frontier for connecting single-cell genomics with epitopes and functions. Mapping of transcriptomes in single-cells and the integration with cell phenotypes enable a better understanding of cellular states. However, assembling these paired omics into a unified representation of the cellular state remains challenging with the unique technical characteristics of each measurement. In this study, we built a deep parameter inference model (DPI) based on the properties of single-cell multimodal data. DPI is a complete single-cell multimodal omics analysis framework, which has built in multimodal data preprocessing, multimodal data integration, multimodal data reconstruction, reference and query, disturbance prediction and other analysis functions.

Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission.
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Posted April 05, 2022.
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Single-cell multimodal modeling with deep parametric inference
Huan Hu
bioRxiv 2022.04.04.486878; doi: https://doi.org/10.1101/2022.04.04.486878
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Single-cell multimodal modeling with deep parametric inference
Huan Hu
bioRxiv 2022.04.04.486878; doi: https://doi.org/10.1101/2022.04.04.486878

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