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SOX9 binds TCFs to mediate Wnt/β-catenin target gene activation

View ORCID ProfileAravinda-Bharathi Ramakrishnan, Peter E. Burby, Kavya Adiga, View ORCID ProfileKen M. Cadigan
doi: https://doi.org/10.1101/2022.04.06.487337
Aravinda-Bharathi Ramakrishnan
Department of Molecular, Cellular, and Developmental Biology, University of Michigan, Ann Arbor, MI 48109 USA
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Peter E. Burby
Department of Molecular, Cellular, and Developmental Biology, University of Michigan, Ann Arbor, MI 48109 USA
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Kavya Adiga
Department of Molecular, Cellular, and Developmental Biology, University of Michigan, Ann Arbor, MI 48109 USA
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Ken M. Cadigan
Department of Molecular, Cellular, and Developmental Biology, University of Michigan, Ann Arbor, MI 48109 USA
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  • ORCID record for Ken M. Cadigan
  • For correspondence: cadigan@umich.edu
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Abstract

Activation of the Wnt/β-catenin pathway regulates gene expression by promoting the formation of a β-catenin-TCF complex on target gene chromatin. The transcription factor SOX9 antagonises Wnt signalling in many contexts through its ability to down-regulate β-catenin protein levels. Here, we find that SOX9 promotes the proliferation of Wnt-driven colorectal cancer (CRC) cells. We identify multiple enhancers activated by SOX9 working in concert with the Wnt pathway. These enhancers are co-occupied by TCFs and SOX9 and contain TCF and SOX9 binding sites that are necessary for transcriptional activation. In addition, we identify a physical interaction between the DNA-binding domains of TCFs and SOX9 and show that TCF-SOX9 interactions are important for target gene regulation and CRC cell growth. Our work demonstrates a highly context-dependent effect of SOX9 on Wnt targets, with activation or repression being dependent on the presence or absence of SOX9 binding sites on Wnt-regulated enhancers respectively.

Competing Interest Statement

The authors have declared no competing interest.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY 4.0 International license.
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Posted April 08, 2022.
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SOX9 binds TCFs to mediate Wnt/β-catenin target gene activation
Aravinda-Bharathi Ramakrishnan, Peter E. Burby, Kavya Adiga, Ken M. Cadigan
bioRxiv 2022.04.06.487337; doi: https://doi.org/10.1101/2022.04.06.487337
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SOX9 binds TCFs to mediate Wnt/β-catenin target gene activation
Aravinda-Bharathi Ramakrishnan, Peter E. Burby, Kavya Adiga, Ken M. Cadigan
bioRxiv 2022.04.06.487337; doi: https://doi.org/10.1101/2022.04.06.487337

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