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Parallel cryo electron tomography on in situ lamellae

View ORCID ProfileFabian Eisenstein, View ORCID ProfileHaruaki Yanagisawa, View ORCID ProfileHiroka Kashihara, View ORCID ProfileMasahide Kikkawa, View ORCID ProfileSachiko Tsukita, View ORCID ProfileRadostin Danev
doi: https://doi.org/10.1101/2022.04.07.487557
Fabian Eisenstein
aGraduate School of Medicine, University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, 113-0033 Tokyo, Japan
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Haruaki Yanagisawa
aGraduate School of Medicine, University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, 113-0033 Tokyo, Japan
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Hiroka Kashihara
bAdvanced Comprehensive Research Organization, Teikyo University, 2-21-1 Kaga, Itabashi-ku, 173-0003 Tokyo, Japan
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Masahide Kikkawa
aGraduate School of Medicine, University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, 113-0033 Tokyo, Japan
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Sachiko Tsukita
bAdvanced Comprehensive Research Organization, Teikyo University, 2-21-1 Kaga, Itabashi-ku, 173-0003 Tokyo, Japan
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Radostin Danev
aGraduate School of Medicine, University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, 113-0033 Tokyo, Japan
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Abstract

In situ cryo electron tomography of cryo focused ion beam milled samples emerged in recent years as a powerful technique for structural studies of macromolecular complexes in their native cellular environment. The lamella-shaped samples, however, have a limited area and are created with a necessary pretilt. This severely limits the possibilities for recording tomographic tilt series in a high-throughput manner. Here, we utilise a geometrical sample model and optical image shift to record tens of tilt series in parallel, thereby saving time and gaining sample areas conventionally used for tracking of specimen movement. The parallel cryo electron tomography (PACE-tomo) method achieves a throughput faster than 5 min per tilt series and allows the collection of sample areas that were previously unreachable, thus maximising the amount of data from each lamella. Performance testing with ribosomes in vitro and in situ on state-of-the-art and general-purpose microscopes demonstrated the high-throughput and high-quality of PACE-tomo.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • https://github.com/eisfabian/PACEtomo

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC 4.0 International license.
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Posted April 08, 2022.
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Parallel cryo electron tomography on in situ lamellae
Fabian Eisenstein, Haruaki Yanagisawa, Hiroka Kashihara, Masahide Kikkawa, Sachiko Tsukita, Radostin Danev
bioRxiv 2022.04.07.487557; doi: https://doi.org/10.1101/2022.04.07.487557
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Parallel cryo electron tomography on in situ lamellae
Fabian Eisenstein, Haruaki Yanagisawa, Hiroka Kashihara, Masahide Kikkawa, Sachiko Tsukita, Radostin Danev
bioRxiv 2022.04.07.487557; doi: https://doi.org/10.1101/2022.04.07.487557

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