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Molecular mechanisms of microbiome modulation by the diatom secondary metabolite azelaic acid

View ORCID ProfileAhmed A. Shibl, Michael A. Ochsenkühn, Amin R. Mohamed, Lisa Coe, Yejie Yun, Shady A. Amin
doi: https://doi.org/10.1101/2022.04.08.487398
Ahmed A. Shibl
1Marine Microbial Ecology Laboratory, Biology Program, New York University Abu Dhabi, Abu Dhabi 129188, United Arab Emirates
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  • ORCID record for Ahmed A. Shibl
Michael A. Ochsenkühn
1Marine Microbial Ecology Laboratory, Biology Program, New York University Abu Dhabi, Abu Dhabi 129188, United Arab Emirates
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Amin R. Mohamed
1Marine Microbial Ecology Laboratory, Biology Program, New York University Abu Dhabi, Abu Dhabi 129188, United Arab Emirates
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Lisa Coe
1Marine Microbial Ecology Laboratory, Biology Program, New York University Abu Dhabi, Abu Dhabi 129188, United Arab Emirates
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Yejie Yun
1Marine Microbial Ecology Laboratory, Biology Program, New York University Abu Dhabi, Abu Dhabi 129188, United Arab Emirates
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Shady A. Amin
1Marine Microbial Ecology Laboratory, Biology Program, New York University Abu Dhabi, Abu Dhabi 129188, United Arab Emirates
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  • For correspondence: samin@nyu.edu
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Abstract

Photosynthetic eukaryotes, such as plants and microalgae, modulate their microbiome using the dicarboxylate metabolite azelaic acid (Aze), a molecule that is used as a carbon source for some heterotrophs but is toxic to others. Uptake and assimilation mechanisms of Aze into bacterial cells are mostly unknown, nor its ability to promote or inhibit growth. Here, we use transcriptomics, isotope labeling, and coexpression networks of master transcriptional factors in two marine bacteria to identify the first putative Aze transporter in bacteria, map Aze catabolism through fatty acid degradation and downstream pathways, infer Aze toxicity to the ribosome, and show that Aze catabolism is restricted to 13 bacterial families across terrestrial and marine ecosystems dominated by algal and plant symbionts. Seawater mesocosms amended with Aze enrich for bacterial families that are able to catabolise Aze. These findings shed light on the role of infochemicals in modulating eukaryote-microbiome interactions across diverse ecosystems.

Competing Interest Statement

The authors have declared no competing interest.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission.
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Posted April 10, 2022.
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Molecular mechanisms of microbiome modulation by the diatom secondary metabolite azelaic acid
Ahmed A. Shibl, Michael A. Ochsenkühn, Amin R. Mohamed, Lisa Coe, Yejie Yun, Shady A. Amin
bioRxiv 2022.04.08.487398; doi: https://doi.org/10.1101/2022.04.08.487398
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Molecular mechanisms of microbiome modulation by the diatom secondary metabolite azelaic acid
Ahmed A. Shibl, Michael A. Ochsenkühn, Amin R. Mohamed, Lisa Coe, Yejie Yun, Shady A. Amin
bioRxiv 2022.04.08.487398; doi: https://doi.org/10.1101/2022.04.08.487398

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