Summary
In vitro fertilization (IVF) treatment protocols require frequent monitoring of the ovarian follicle growth process. We report FollicleFinder, an open source pipeline for the automated, 3D segmentation of ovarian follicles. FollicleFinder also accurately measures clinically-relevant morphological properties such as diameter, surface area, and volume.
Availability The FollicleFinder pipeline is available at https://git.bsse.ethz.ch/iber/ovary-analysis and the graphical user interface is available at https://git.bsse.ethz.ch/iber/follicle-tracker.
Competing Interest Statement
The authors have declared no competing interest.
Copyright
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY 4.0 International license.