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Preclinical evaluation of CDK4 phosphorylation predicts high sensitivity of malignant pleural mesotheliomas to CDK4/6 inhibition

Sabine Paternot, Eric Raspé, Clément Meiller, Maxime Tarabichi, Jean-Baptiste Assié, Frederick Libert, Myriam Remmelink, Xavier Bisteau, Patrick Pauwels, Yuna Blum, Nolwenn Le Stang, Séverine Tabone-Eglinger, Françoise Galateau-Sallé, Christophe Blanquart, Jan P. Van Meerbeeck, Thierry Berghmans, Didier Jean, Pierre P. Roger
doi: https://doi.org/10.1101/2022.04.11.487857
Sabine Paternot
1Institut de Recherche Interdisciplinaire en Biologie Humaine et Moléculaire (IRIBHM), Université Libre de Bruxelles, Brussels, Belgium. ULB-Cancer Research Center (U-CRC), Université Libre de Bruxelles, Brussels, Belgium
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  • For correspondence: Sabine.Paternot@ulb.be Pierre.Roger@ulb.be
Eric Raspé
1Institut de Recherche Interdisciplinaire en Biologie Humaine et Moléculaire (IRIBHM), Université Libre de Bruxelles, Brussels, Belgium. ULB-Cancer Research Center (U-CRC), Université Libre de Bruxelles, Brussels, Belgium
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Clément Meiller
2Centre de Recherche des Cordeliers, Inserm, Sorbonne Université, Université de Paris, Functional Genomics of Solid Tumors, Paris, France
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Maxime Tarabichi
1Institut de Recherche Interdisciplinaire en Biologie Humaine et Moléculaire (IRIBHM), Université Libre de Bruxelles, Brussels, Belgium. ULB-Cancer Research Center (U-CRC), Université Libre de Bruxelles, Brussels, Belgium
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Jean-Baptiste Assié
2Centre de Recherche des Cordeliers, Inserm, Sorbonne Université, Université de Paris, Functional Genomics of Solid Tumors, Paris, France
3University Paris-Est Créteil (UPEC), CEpiA (Clinical Epidemiology and Ageing), EA 7376-IMRB, UPEC, Créteil, France
4GRC OncoThoParisEst, Service de Pneumologie, CHI Créteil, UPEC, Créteil, France
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Frederick Libert
1Institut de Recherche Interdisciplinaire en Biologie Humaine et Moléculaire (IRIBHM), Université Libre de Bruxelles, Brussels, Belgium. ULB-Cancer Research Center (U-CRC), Université Libre de Bruxelles, Brussels, Belgium
5BRIGHTCore, ULB, Brussels, Belgium
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Myriam Remmelink
6Department of Pathology, Erasme Hospital, Université Libre de Bruxelles, Brussels, Belgium
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Xavier Bisteau
1Institut de Recherche Interdisciplinaire en Biologie Humaine et Moléculaire (IRIBHM), Université Libre de Bruxelles, Brussels, Belgium. ULB-Cancer Research Center (U-CRC), Université Libre de Bruxelles, Brussels, Belgium
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Patrick Pauwels
7Center for Oncological Research (CORE), Integrated Personalized and Precision Oncology Network (IPPON), Wilrijk, Belgium
8Department of Pathology, Antwerp University Hospital, Edegem, Belgium
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Yuna Blum
9Programme Cartes d’Identité des Tumeurs (CIT), Ligue Nationale Contre Le Cancer, Paris, France
10IGDR UMR 6290, CNRS, Université de Rennes 1, Rennes, France
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Nolwenn Le Stang
11MESOBANK, Department of Biopathology, Centre Léon Bérard, Lyon, France
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Séverine Tabone-Eglinger
11MESOBANK, Department of Biopathology, Centre Léon Bérard, Lyon, France
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Françoise Galateau-Sallé
11MESOBANK, Department of Biopathology, Centre Léon Bérard, Lyon, France
12Cancer Research Center INSERM U1052-CNRS 5286R, Lyon, France
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Christophe Blanquart
13Nantes Université, Inserm, CNRS, Université d’Angers, CRCI2NA, Nantes - France
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Jan P. Van Meerbeeck
14Department of Thoracic Oncology, Antwerp University Hospital, Edegem, Belgium
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Thierry Berghmans
15Clinic of Thoracic Oncology, Institut Jules Bordet, Université Libre de Bruxelles, Brussels, Belgium
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Didier Jean
2Centre de Recherche des Cordeliers, Inserm, Sorbonne Université, Université de Paris, Functional Genomics of Solid Tumors, Paris, France
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Pierre P. Roger
1Institut de Recherche Interdisciplinaire en Biologie Humaine et Moléculaire (IRIBHM), Université Libre de Bruxelles, Brussels, Belgium. ULB-Cancer Research Center (U-CRC), Université Libre de Bruxelles, Brussels, Belgium
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  • For correspondence: Sabine.Paternot@ulb.be Pierre.Roger@ulb.be
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Abstract

Malignant pleural mesothelioma (MPM) is an aggressive cancer with limited therapeutic options. In this study, we evaluated the impact of CDK4/6 inhibition by palbociclib in a panel of 28 MPM cell lines, including 19 patient-derived cell lines, using a variety of approaches including RNA-sequencing. Palbociclib used alone sufficed to strongly and durably inhibit the proliferation of 23 MPM cell lines, indicating a unique sensitivity of MPM to CDK4/6 inhibition. Importantly, insensitivity to palbociclib was mostly explained by the lack of active T172-phosphorylated CDK4. This was associated with the high p16INK4A (CDKN2A) levels that accompany RB1 defects or inactivation, and also (unexpectedly) cyclin E1 over-expression in the presence of wild-type RB1. Prolonged treatment with palbociclib irreversibly inhibited proliferation despite re-induction of cell cycle genes upon drug washout. A senescence-associated secretory phenotype including various potentially immunogenic components was also irreversibly induced. Phosphorylated CDK4 was detected in 80% of 47 MPM tumors indicating their intrinsic sensitivity to CDK4/6 inhibitors. The absence of this phosphorylation in some highly proliferative MPM tumors was linked to partial deletions of RB1, leading to very high p16 (CDKN2A) expression. Our study strongly supports the clinical evaluation of CDK4/6 inhibitory drugs for MPM treatment, in monotherapy or combination therapy.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • Competing interests: The authors have no competing interests to declare.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission.
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Preclinical evaluation of CDK4 phosphorylation predicts high sensitivity of malignant pleural mesotheliomas to CDK4/6 inhibition
Sabine Paternot, Eric Raspé, Clément Meiller, Maxime Tarabichi, Jean-Baptiste Assié, Frederick Libert, Myriam Remmelink, Xavier Bisteau, Patrick Pauwels, Yuna Blum, Nolwenn Le Stang, Séverine Tabone-Eglinger, Françoise Galateau-Sallé, Christophe Blanquart, Jan P. Van Meerbeeck, Thierry Berghmans, Didier Jean, Pierre P. Roger
bioRxiv 2022.04.11.487857; doi: https://doi.org/10.1101/2022.04.11.487857
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Preclinical evaluation of CDK4 phosphorylation predicts high sensitivity of malignant pleural mesotheliomas to CDK4/6 inhibition
Sabine Paternot, Eric Raspé, Clément Meiller, Maxime Tarabichi, Jean-Baptiste Assié, Frederick Libert, Myriam Remmelink, Xavier Bisteau, Patrick Pauwels, Yuna Blum, Nolwenn Le Stang, Séverine Tabone-Eglinger, Françoise Galateau-Sallé, Christophe Blanquart, Jan P. Van Meerbeeck, Thierry Berghmans, Didier Jean, Pierre P. Roger
bioRxiv 2022.04.11.487857; doi: https://doi.org/10.1101/2022.04.11.487857

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