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Genetic admixture history and forensic characteristics of Tibeto-Burman-speaking Qiang people explored via the newly developed Y-STR panel and genome-wide SNP data

View ORCID ProfileGuanglin He, Atif Adnan, Mengge Wang, Wedad Saeed Al-Qahtani, Fatmah Ahmed Safhi, Hui-Yuan Yeh, Sibte Hadi, Chuan-Chao Wanag, Chao Liu, Jun Yao
doi: https://doi.org/10.1101/2022.04.13.488250
Guanglin He
1Institute of Rare Diseases, West China Hospital of Sichuan University, Sichuan University, Chengdu, 610000, China
3Department of Anthropology and Ethnology, Institute of Anthropology, School of Sociology and Anthropology, Xiamen University, Xiamen, 361005, China
5School of Humanities, Nanyang Technological University, Singapore, 224050, Singapore
6State Key Laboratory of Cellular Stress Biology, National Institute for Data Science in Health and Medicine, School of Life Sciences, Xiamen University, Xiamen, 361005, China
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  • ORCID record for Guanglin He
  • For correspondence: yaojun198717@163.com mirzaatifadnan@gmail.com wang@xmu.edu.cn liuchaogzf@163.com guanglinhescu@163.com
Atif Adnan
2Department of Forensic Genetics, School of Forensic Medicine, China Medical University, Shenyang, 110000, China
3Department of Anthropology and Ethnology, Institute of Anthropology, School of Sociology and Anthropology, Xiamen University, Xiamen, 361005, China
4Department of Forensic Sciences, College of Criminal Justice, Naif Arab University of Security Sciences, Riyadh, 11452, Kingdom of Saudi Arabia
6State Key Laboratory of Cellular Stress Biology, National Institute for Data Science in Health and Medicine, School of Life Sciences, Xiamen University, Xiamen, 361005, China
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  • For correspondence: yaojun198717@163.com mirzaatifadnan@gmail.com wang@xmu.edu.cn liuchaogzf@163.com guanglinhescu@163.com
Mengge Wang
7Faculty of Forensic Medicine, Zhongshan School of Medicine, Sun Yat-sen University, Guangzhou, 510275, China
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Wedad Saeed Al-Qahtani
4Department of Forensic Sciences, College of Criminal Justice, Naif Arab University of Security Sciences, Riyadh, 11452, Kingdom of Saudi Arabia
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Fatmah Ahmed Safhi
8Department of Biology, College of Sciences, Princess Nourah bint Abdulrahman University, Riyadh, 11671, Saudi Arabia
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Hui-Yuan Yeh
5School of Humanities, Nanyang Technological University, Singapore, 224050, Singapore
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Sibte Hadi
4Department of Forensic Sciences, College of Criminal Justice, Naif Arab University of Security Sciences, Riyadh, 11452, Kingdom of Saudi Arabia
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Chuan-Chao Wanag
3Department of Anthropology and Ethnology, Institute of Anthropology, School of Sociology and Anthropology, Xiamen University, Xiamen, 361005, China
6State Key Laboratory of Cellular Stress Biology, National Institute for Data Science in Health and Medicine, School of Life Sciences, Xiamen University, Xiamen, 361005, China
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  • For correspondence: yaojun198717@163.com mirzaatifadnan@gmail.com wang@xmu.edu.cn liuchaogzf@163.com guanglinhescu@163.com
Chao Liu
9Department of Forensic Genetics, School of Forensic Medicine, Southern Medical University, Guangzhou, 510515, China
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  • For correspondence: yaojun198717@163.com mirzaatifadnan@gmail.com wang@xmu.edu.cn liuchaogzf@163.com guanglinhescu@163.com
Jun Yao
2Department of Forensic Genetics, School of Forensic Medicine, China Medical University, Shenyang, 110000, China
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  • For correspondence: yaojun198717@163.com mirzaatifadnan@gmail.com wang@xmu.edu.cn liuchaogzf@163.com guanglinhescu@163.com
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ABSTRACT

Fine-scale patterns of population genetic structure and diversity of ethnolinguistically diverse populations are important for biogeographical ancestry inference, kinship testing and also for the development and validation of new kits focused on forensic personal identification. Analyses focused on forensic markers and genome-wide SNP data can provide new insights into the origin, admixture processes and forensic characteristics of targeted populations. Qiang people with a large sample size among Tibeto-Burman-speaking populations widely reside in the middle latitude of the Tibetan Plateau. However, their genetic structure and forensic features have remained uncharacterized due to the paucity of comprehensive genetic analyses. Here, we first developed and validated the AGCU-Y30 Y-STR panel, which contains slowly and moderately mutating Y-STRs, and then we conducted comprehensive population genetic analyses based on Y-STRs and genome-wide SNPs to explore the admixture history of Qiang people and their neighbours. The validated results of this panel showed that the new Y-STR kit was sensitive and robust enough for forensic applications. Haplotype diversity (HD) ranging from 0.9932 to 0.9996 and allelic frequencies ranging from 0.001946 to 0.8326 in 514 Qiang people demonstrated that all included markers were highly polymorphic in Tibeto-Burman people. Population genetic analyses based on Y-STRs (RST, FST, MDS, NJ, PCA and MJNs) revealed that the Qiang people harboured a paternally close relationship with lowland Tibetan-Yi corridor populations. Furthermore, we made a comprehensive population admixture analysis among Eurasian modern and ancient populations based on the shared alleles. We determined that the Qiang people were a genetically admixed population and showed the closest relationship with Tibetan and Neolithic Yellow River farmers. Admixture modelling showed that Qiang people shared the primary ancestry with Tibetan and was derived from North China, supporting the hypothesis of common origin between Tibetan and Qiang people.

Competing Interest Statement

The authors have declared no competing interest.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission.
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Posted April 15, 2022.
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Genetic admixture history and forensic characteristics of Tibeto-Burman-speaking Qiang people explored via the newly developed Y-STR panel and genome-wide SNP data
Guanglin He, Atif Adnan, Mengge Wang, Wedad Saeed Al-Qahtani, Fatmah Ahmed Safhi, Hui-Yuan Yeh, Sibte Hadi, Chuan-Chao Wanag, Chao Liu, Jun Yao
bioRxiv 2022.04.13.488250; doi: https://doi.org/10.1101/2022.04.13.488250
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Genetic admixture history and forensic characteristics of Tibeto-Burman-speaking Qiang people explored via the newly developed Y-STR panel and genome-wide SNP data
Guanglin He, Atif Adnan, Mengge Wang, Wedad Saeed Al-Qahtani, Fatmah Ahmed Safhi, Hui-Yuan Yeh, Sibte Hadi, Chuan-Chao Wanag, Chao Liu, Jun Yao
bioRxiv 2022.04.13.488250; doi: https://doi.org/10.1101/2022.04.13.488250

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