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resPAINT: Accelerating volumetric super-resolution localisation microscopy by active control of probe emission

Edward W. Sanders, Alexander R. Carr, Ezra Bruggeman, Markus Koerbel, Sarah I. Benaissa, Robert F. Donat, Ana Mafalda Santos, James McColl, Kevin O’Holleran, David Klenerman, Simon J. Davis, Steven F. Lee, Aleks Ponjavic
doi: https://doi.org/10.1101/2022.04.14.488333
Edward W. Sanders
1Department of Chemistry, University of Cambridge, Cambridge, CB2 1EW, UK
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Alexander R. Carr
1Department of Chemistry, University of Cambridge, Cambridge, CB2 1EW, UK
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Ezra Bruggeman
1Department of Chemistry, University of Cambridge, Cambridge, CB2 1EW, UK
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Markus Koerbel
1Department of Chemistry, University of Cambridge, Cambridge, CB2 1EW, UK
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Sarah I. Benaissa
3Cambridge Advanced Imaging Centre, University of Cambridge, CB2 3DY Cambridge, UK
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Robert F. Donat
2Radcliffe Department of Medicine, John Radcliffe Hospital, University of Oxford, OX3 9DS Oxford, UK
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Ana Mafalda Santos
2Radcliffe Department of Medicine, John Radcliffe Hospital, University of Oxford, OX3 9DS Oxford, UK
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James McColl
1Department of Chemistry, University of Cambridge, Cambridge, CB2 1EW, UK
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Kevin O’Holleran
3Cambridge Advanced Imaging Centre, University of Cambridge, CB2 3DY Cambridge, UK
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David Klenerman
1Department of Chemistry, University of Cambridge, Cambridge, CB2 1EW, UK
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Simon J. Davis
2Radcliffe Department of Medicine, John Radcliffe Hospital, University of Oxford, OX3 9DS Oxford, UK
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Steven F. Lee
1Department of Chemistry, University of Cambridge, Cambridge, CB2 1EW, UK
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  • For correspondence: sl591@cam.ac.uk a.ponjavic@leeds.ac.uk
Aleks Ponjavic
1Department of Chemistry, University of Cambridge, Cambridge, CB2 1EW, UK
4School of Physics and Astronomy, University of Leeds, Woodhouse Lane, Leeds LS2 9JT, UK
5School of Food Science and Nutrition, University of Leeds, Woodhouse Lane, Leeds LS2 9JT, UK
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  • For correspondence: sl591@cam.ac.uk a.ponjavic@leeds.ac.uk
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Abstract

Points for accumulation in nanoscale topography (PAINT) allows the acquisition of practically unlimited measurements in localisation microscopy. However, PAINT is inherently limited by unwanted background fluorescence at high probe concentrations, especially in large depth-of-field volumetric imaging techniques. Here we present reservoir-PAINT (resPAINT), in which we combine PAINT with active control of probe photophysics. In resPAINT, a ‘reservoir’ of non-fluorescent activatable probes accumulate on the target, which makes it possible to drastically improve the localisation rate (by up to 50-fold) compared to conventional PAINT, without any compromise in contrast. By combining resPAINT with large depth-of-field microscopy, we demonstrate volumetric super-resolution imaging of entire cell surfaces. We then generalise the approach by implementing multiple switching strategies, including photoactivation and spontaneous blinking. We also implement alternative volumetric imaging modalities including the double-helix pointspread function, the tetrapod point-spread function and singlemolecule light field microscopy. Finally, we show that resPAINT can be used with a Fab to image membrane proteins, effectively extending the operating regime of conventional PAINT to encompass a larger range of biological interactions.

Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted April 15, 2022.
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resPAINT: Accelerating volumetric super-resolution localisation microscopy by active control of probe emission
Edward W. Sanders, Alexander R. Carr, Ezra Bruggeman, Markus Koerbel, Sarah I. Benaissa, Robert F. Donat, Ana Mafalda Santos, James McColl, Kevin O’Holleran, David Klenerman, Simon J. Davis, Steven F. Lee, Aleks Ponjavic
bioRxiv 2022.04.14.488333; doi: https://doi.org/10.1101/2022.04.14.488333
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resPAINT: Accelerating volumetric super-resolution localisation microscopy by active control of probe emission
Edward W. Sanders, Alexander R. Carr, Ezra Bruggeman, Markus Koerbel, Sarah I. Benaissa, Robert F. Donat, Ana Mafalda Santos, James McColl, Kevin O’Holleran, David Klenerman, Simon J. Davis, Steven F. Lee, Aleks Ponjavic
bioRxiv 2022.04.14.488333; doi: https://doi.org/10.1101/2022.04.14.488333

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