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Heterotypic Endosomal Interactions Drive Emergent Early Endosomal Maturations

Harrison M York, Kunaal Joshi, Charles S Wright, Ullhas K Moorthi, Hetvi Gandhi, Abhishek Patil, Srividya Iyer-Biswas, View ORCID ProfileSenthil Arumugam
doi: https://doi.org/10.1101/2022.04.15.488498
Harrison M York
1Monash Biomedicine Discovery Institute, Faculty of Medicine, Nursing and Health Sciences, Monash University, Clayton/Melbourne, VIC 3800, Australia
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  • For correspondence: harrison.york@monash.edu iyerbiswas@purdue.edu senthil.arumugam@monash.edu
Kunaal Joshi
2Department of Physics and Astronomy, Purdue University, West Lafayette, IN 47907, USA
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Charles S Wright
2Department of Physics and Astronomy, Purdue University, West Lafayette, IN 47907, USA
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Ullhas K Moorthi
1Monash Biomedicine Discovery Institute, Faculty of Medicine, Nursing and Health Sciences, Monash University, Clayton/Melbourne, VIC 3800, Australia
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Hetvi Gandhi
1Monash Biomedicine Discovery Institute, Faculty of Medicine, Nursing and Health Sciences, Monash University, Clayton/Melbourne, VIC 3800, Australia
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Abhishek Patil
1Monash Biomedicine Discovery Institute, Faculty of Medicine, Nursing and Health Sciences, Monash University, Clayton/Melbourne, VIC 3800, Australia
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Srividya Iyer-Biswas
2Department of Physics and Astronomy, Purdue University, West Lafayette, IN 47907, USA
3Santa Fe Institute, Santa Fe, NM 87501, USA
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  • For correspondence: harrison.york@monash.edu iyerbiswas@purdue.edu senthil.arumugam@monash.edu
Senthil Arumugam
1Monash Biomedicine Discovery Institute, Faculty of Medicine, Nursing and Health Sciences, Monash University, Clayton/Melbourne, VIC 3800, Australia
4ARC Centre of Excellence in Advanced Molecular Imaging, Monash University, Clayton/ Melbourne, VIC 3800, Australia
5Single Molecule Science, European Molecular Biological Laboratory Australia (EMBL Australia), University of New South Wales, Sydney, Australia
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  • ORCID record for Senthil Arumugam
  • For correspondence: harrison.york@monash.edu iyerbiswas@purdue.edu senthil.arumugam@monash.edu
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ABSTRACT

Endosomal trafficking in single cells entails the generation of membrane vesicles; their motor protein-mediated transport; morphological alterations such as tubulation, fusion and fission; as well as dynamic maintenance of various identities, defined by the lipid composition and localisation of specific proteins on their membranes. Endosomal maturation is a major feature of this process. It is classically described as endosomes shedding one specific protein and acquiring another, resulting in an identity change. This step governs the flux and the number of distinct endosomal populations. Many of the molecular players that characterise different compartments have been identified—for example, APPL1 on very early endosomes, and EEA1 on early endosomes. However, how an ensemble population of endosomes matures at a whole cell level has remained unstudied. Here, we describe a novel inter-endosomal interaction-based feed-forward mechanism that drives endosomal conversions and controls ensemble conversion rates at the whole cell level. Furthermore, using live-cell Förster Resonance Energy Transfer, we demonstrate that this process is underpinned by co-ordinated precedence in EEA1 binding via its N- and C-terminal domains, ensuring the biochemical maturation of these vesicles. Using simulations, we provide a quantitative framework to recapture the experimentally observed characteristics in the reaction scheme and the activity of EEA1. We demonstrate that the model of APPL1 to EEA1 endosomal maturation needs to be extended to include heterotypic interactions between endosomes that result in conversions, which form a significant fraction of events, in addition to the previously reported single endosome-centric maturation models. Based on these results, we motivate how temporal specificity emerges in an inherently stochastic system—namely, through a timekeeping mechanism via an N-terminal EEA1 trigger that enables deterministic outcomes in ensemble endosomal conversions.

Competing Interest Statement

The authors have declared no competing interest.

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Posted April 16, 2022.
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Heterotypic Endosomal Interactions Drive Emergent Early Endosomal Maturations
Harrison M York, Kunaal Joshi, Charles S Wright, Ullhas K Moorthi, Hetvi Gandhi, Abhishek Patil, Srividya Iyer-Biswas, Senthil Arumugam
bioRxiv 2022.04.15.488498; doi: https://doi.org/10.1101/2022.04.15.488498
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Heterotypic Endosomal Interactions Drive Emergent Early Endosomal Maturations
Harrison M York, Kunaal Joshi, Charles S Wright, Ullhas K Moorthi, Hetvi Gandhi, Abhishek Patil, Srividya Iyer-Biswas, Senthil Arumugam
bioRxiv 2022.04.15.488498; doi: https://doi.org/10.1101/2022.04.15.488498

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