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Making Biomedical Research Software FAIR: Actionable Step-by-step Guidelines with a User-support Tool

View ORCID ProfileBhavesh Patel, View ORCID ProfileSanjay Soundarajan, View ORCID ProfileHervé Ménager, Zicheng Hu
doi: https://doi.org/10.1101/2022.04.18.488694
Bhavesh Patel
1FAIR Data Innovations Hub, California Medical Innovations Institute, San Diego, CA 92121, USA
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  • For correspondence: bpatel@calmi2.org
Sanjay Soundarajan
1FAIR Data Innovations Hub, California Medical Innovations Institute, San Diego, CA 92121, USA
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Hervé Ménager
2Institut Pasteur, Université Paris Cité, Bioinformatics and Biostatistics Hub, 75015 Paris, France
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Zicheng Hu
3Computational Health Science, University of California San Francisco, San Francisco, CA 94158, USA
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Abstract

Findable, Accessible, Interoperable, and Reusable (FAIR) guiding principles tailored for research software have been proposed by the FAIR for Research Software (FAIR4RS) Working Group. They provide a foundation for optimizing the reuse of research software. The FAIR4RS principles are, however, aspirational and do not provide practical instructions to the researchers. To fill this gap, we propose in this work the first actionable step-by-step guidelines for biomedical researchers to make their research software compliant with the FAIR4RS principles. We designate them as the FAIR Biomedical Research Software (FAIR-BioRS) guidelines. Our process for developing these guidelines, presented here, is based on an in-depth study of the FAIR4RS principles and a thorough review of current practices in the field. To support researchers, we have also developed a workflow that streamlines the process of implementing these guidelines. This workflow is incorporated in FAIRshare, a free and open-source software application aimed at simplifying the curation and sharing of FAIR biomedical data and software through user-friendly interfaces and automation. Details about this tool are also presented.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • The FAIR-BioRS guidelines were updated to v2.0.0 as per comments from reviewers (this work is under peer-review) and other community feedback we have received along the ways. The manuscript was updated accordingly.

  • https://github.com/FAIR-BioRS

  • https://doi.org/10.5281/zenodo.8115012

  • https://doi.org/10.5281/zenodo.8112100

  • https://doi.org/10.5281/zenodo.8112631

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY 4.0 International license.
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Posted July 06, 2023.
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Making Biomedical Research Software FAIR: Actionable Step-by-step Guidelines with a User-support Tool
Bhavesh Patel, Sanjay Soundarajan, Hervé Ménager, Zicheng Hu
bioRxiv 2022.04.18.488694; doi: https://doi.org/10.1101/2022.04.18.488694
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Making Biomedical Research Software FAIR: Actionable Step-by-step Guidelines with a User-support Tool
Bhavesh Patel, Sanjay Soundarajan, Hervé Ménager, Zicheng Hu
bioRxiv 2022.04.18.488694; doi: https://doi.org/10.1101/2022.04.18.488694

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